Task 99991390

Name ebola_RdRp_v1_sidock_00698703_r3_s-24.0_1
Workunit 70336827
Created 14 Mar 2026, 10:11:39 UTC
Sent 14 Mar 2026, 13:57:05 UTC
Report deadline 18 Mar 2026, 13:57:05 UTC
Received 18 Mar 2026, 6:25:46 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 83096
Run time 8 hours 37 min 29 sec
CPU time 8 hours 34 min 46 sec
Validate state Valid
Credit 541.42
Device peak FLOPS 8.26 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.18 MB
Peak swap size 247.61 MB
Peak disk usage 20.26 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
07:14:27 (81264): wrapper (7.17.26016): starting
07:14:27 (81264): wrapper (7.17.26016): starting
07:14:27 (81264): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:11:38 (106932): wrapper (7.17.26016): starting
12:11:38 (106932): wrapper (7.17.26016): starting
12:11:38 (106932): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:12:53 (112263): wrapper (7.17.26016): starting
13:12:53 (112263): wrapper (7.17.26016): starting
13:12:53 (112263): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x603bc223ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x790f4de45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x790f4deadd75]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x603bc225c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x603bc227b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x790f4de45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x790f4deecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x790f4def9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x790f4df2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x603bc2251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x603bc221e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x790f4de2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x790f4de2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x603bc221aa3a]

Exiting...
18:37:12 (1990): wrapper (7.17.26016): starting
18:37:12 (1990): wrapper (7.17.26016): starting
18:37:12 (1990): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:25:35 (1990): cmdock exited; CPU time 17212.796601
23:25:35 (1990): called boinc_finish(0)

</stderr_txt>
]]>


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