Task 99987527

Name ebola_RdRp_v1_sidock_00691069_r1_s-24.0_1
Workunit 70306289
Created 12 Mar 2026, 19:41:38 UTC
Sent 14 Mar 2026, 11:10:25 UTC
Report deadline 18 Mar 2026, 11:10:25 UTC
Received 16 Mar 2026, 7:14:27 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 54588
Run time 8 hours 46 min 5 sec
CPU time 8 hours 45 min 40 sec
Validate state Valid
Credit 589.78
Device peak FLOPS 9.84 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.82 MB
Peak swap size 245.70 MB
Peak disk usage 20.34 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
06:48:25 (508078): wrapper (7.17.26016): starting
06:48:26 (508078): wrapper (7.17.26016): starting
06:48:26 (508078): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59c80943ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7970c4e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7970c4e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7970c4e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7970c4e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7970c4e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7970c4ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7970c4eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7970c4eaddce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59c80945c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59c80947b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7970c4e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7970c4eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7970c4ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7970c4f2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x59c809451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59c80941e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7970c4e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7970c4e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59c80941aa3a]

Exiting...
12:35:07 (551879): wrapper (7.17.26016): starting
12:35:07 (551879): wrapper (7.17.26016): starting
12:35:07 (551879): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ca47903ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x720ba5a45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x720ba5a9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x720ba5a4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x720ba5a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x720ba5a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x720ba5aa8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x720ba5aab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x720ba5aaddce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ca47905c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ca47907b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x720ba5a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x720ba5aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x720ba5af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x720ba5b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ca479051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ca47901e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x720ba5a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x720ba5a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ca47901aa3a]

Exiting...
21:00:02 (644485): wrapper (7.17.26016): starting
21:00:02 (644485): wrapper (7.17.26016): starting
21:00:02 (644485): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x563dca63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7a493e445330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7a493e49eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7a493e44527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7a493e4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7a493e4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7a493e4a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7a493e4ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7a493e4addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x563dca65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x563dca67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7a493e445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7a493e4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7a493e4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7a493e52975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563dca651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x563dca61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7a493e42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7a493e42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x563dca61aa3a]

Exiting...
21:00:02 (108148): wrapper (7.17.26016): starting
21:00:02 (108148): wrapper (7.17.26016): starting
21:00:02 (108148): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:14:13 (108148): cmdock exited; CPU time 18011.038947
02:14:13 (108148): called boinc_finish(0)

</stderr_txt>
]]>


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