Task 99985354

Name ebola_RdRp_v1_sidock_00686532_r4_s-24.0_1
Workunit 70288144
Created 11 Mar 2026, 21:05:02 UTC
Sent 14 Mar 2026, 9:36:30 UTC
Report deadline 18 Mar 2026, 9:36:30 UTC
Received 16 Mar 2026, 3:56:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 54588
Run time 8 hours 54 min 19 sec
CPU time 8 hours 53 min 59 sec
Validate state Valid
Credit 611.08
Device peak FLOPS 9.84 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.46 MB
Peak swap size 247.71 MB
Peak disk usage 20.24 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
06:47:32 (507958): wrapper (7.17.26016): starting
06:47:32 (507958): wrapper (7.17.26016): starting
06:47:32 (507958): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64cfbb23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x75d4a1e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x75d4a1e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x75d4a1e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x75d4a1e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x75d4a1e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x75d4a1ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x75d4a1eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x75d4a1eaddce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64cfbb25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64cfbb27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x75d4a1e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75d4a1eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75d4a1ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75d4a1f2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64cfbb251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64cfbb21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75d4a1e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75d4a1e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64cfbb21aa3a]

Exiting...
12:35:07 (551868): wrapper (7.17.26016): starting
12:35:07 (551868): wrapper (7.17.26016): starting
12:35:07 (551868): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58369f83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e4af2e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e4af2e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e4af2e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e4af2e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e4af2e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7e4af2ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7e4af2eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e4af2eaddce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58369f85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58369f87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e4af2e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e4af2eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e4af2ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x7e4af2f0ec93]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x58369f851a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58369f81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e4af2e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e4af2e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58369f81aa3a]

Exiting...
21:00:02 (644480): wrapper (7.17.26016): starting
21:00:02 (644480): wrapper (7.17.26016): starting
21:00:02 (644480): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fd27ae3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76160fe45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x76160fe9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x76160fe4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x76160fe288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x76160fe297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x76160fea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x76160feab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x76160feaddce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fd27ae5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fd27ae7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76160fe45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x76160feecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x76160fef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x76160ff2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fd27ae51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fd27ae1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x76160fe2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x76160fe2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fd27ae1aa3a]

Exiting...
21:00:02 (108145): wrapper (7.17.26016): starting
21:00:02 (108145): wrapper (7.17.26016): starting
21:00:02 (108145): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:56:44 (108145): cmdock exited; CPU time 7000.113318
22:56:44 (108145): called boinc_finish(0)

</stderr_txt>
]]>


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