Task 99984104

Name	ebola_RdRp_v1_sidock_00683788_r1_s-24.0_1
Workunit	70277165
Created	11 Mar 2026, 6:57:24 UTC
Sent	14 Mar 2026, 8:50:53 UTC
Report deadline	18 Mar 2026, 8:50:53 UTC
Received	16 Mar 2026, 11:49:08 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	83105
Run time	1 days 6 hours 30 min 39 sec
CPU time	1 days 6 hours 23 min 58 sec
Validate state	Valid
Credit	3,004.47
Device peak FLOPS	2.99 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	236.34 MB
Peak swap size	246.06 MB
Peak disk usage	20.16 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
09:50:57 (2616): wrapper (7.17.26016): starting
09:50:57 (2616): wrapper (7.17.26016): starting
09:50:57 (2616): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558b86e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76c808445330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x76c80849eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x76c80844527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x76c8084288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x76c8084297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x76c8084a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x76c8084ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x76c8084addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558b86e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558b86e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76c808445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x76c8084ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x76c8084f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x76c80852975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558b86e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558b86e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x76c80842a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x76c80842a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558b86e1aa3a]

Exiting...
09:54:00 (1440): wrapper (7.17.26016): starting
09:54:01 (1440): wrapper (7.17.26016): starting
09:54:01 (1440): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6299d3e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x73ac3f245330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x73ac3f2add75]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6299d3e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6299d3e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x73ac3f245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x73ac3f2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x73ac3f2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73ac3f32975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6299d3e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6299d3e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73ac3f22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73ac3f22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6299d3e1aa3a]

Exiting...
09:57:26 (1431): wrapper (7.17.26016): starting
09:57:27 (1431): wrapper (7.17.26016): starting
09:57:27 (1431): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fa6df83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d045e645330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d045e69eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d045e64527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d045e6288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d045e6297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7d045e6a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7d045e6ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d045e6addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fa6df85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fa6df87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d045e645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d045e6ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d045e6f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d045e72975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fa6df851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fa6df81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d045e62a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d045e62a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fa6df81aa3a]

Exiting...
09:59:38 (1447): wrapper (7.17.26016): starting
09:59:38 (1447): wrapper (7.17.26016): starting
09:59:38 (1447): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:48:58 (1447): cmdock exited; CPU time 109361.128247
12:48:58 (1447): called boinc_finish(0)

</stderr_txt>
]]>