Task 99984103

Name	ebola_RdRp_v1_sidock_00683786_r3_s-24.0_1
Workunit	70277159
Created	11 Mar 2026, 6:57:24 UTC
Sent	14 Mar 2026, 8:50:53 UTC
Report deadline	18 Mar 2026, 8:50:53 UTC
Received	16 Mar 2026, 12:08:27 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	83105
Run time	1 days 6 hours 42 min 17 sec
CPU time	1 days 6 hours 35 min 57 sec
Validate state	Valid
Credit	2,901.94
Device peak FLOPS	2.99 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	236.58 MB
Peak swap size	247.52 MB
Peak disk usage	20.12 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
09:50:56 (2611): wrapper (7.17.26016): starting
09:50:56 (2611): wrapper (7.17.26016): starting
09:50:56 (2611): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b8e0803ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x780a4a045330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x780a4a09eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x780a4a04527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x780a4a0288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x780a4a0297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x780a4a0a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x780a4a0ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x780a4a0addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b8e0805c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b8e0807b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x780a4a045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x780a4a0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x780a4a0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x780a4a12975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b8e08051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b8e0801e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x780a4a02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x780a4a02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b8e0801aa3a]

Exiting...
09:54:00 (1439): wrapper (7.17.26016): starting
09:54:01 (1439): wrapper (7.17.26016): starting
09:54:01 (1439): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63046823ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7454bce45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7454bceadd75]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63046825c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63046827b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7454bce45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7454bceecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7454bcef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7454bcf2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x630468251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63046821e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7454bce2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7454bce2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63046821aa3a]

Exiting...
09:57:26 (1430): wrapper (7.17.26016): starting
09:57:27 (1430): wrapper (7.17.26016): starting
09:57:27 (1430): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b2da103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x797591e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x797591e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x797591e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x797591e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x797591e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x797591ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x797591eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x797591eaddce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b2da105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b2da107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x797591e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x797591eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x797591ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x797591f2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b2da1051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b2da101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x797591e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x797591e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b2da101aa3a]

Exiting...
09:59:38 (1444): wrapper (7.17.26016): starting
09:59:38 (1444): wrapper (7.17.26016): starting
09:59:38 (1444): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:08:19 (1444): cmdock exited; CPU time 110075.619018
13:08:19 (1444): called boinc_finish(0)

</stderr_txt>
]]>