Task 99984053

Name	ebola_RdRp_v1_sidock_00700301_r2_s-24.0_1
Workunit	70343218
Created	11 Mar 2026, 6:19:37 UTC
Sent	14 Mar 2026, 8:50:52 UTC
Report deadline	18 Mar 2026, 8:50:52 UTC
Received	16 Mar 2026, 13:29:06 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	83105
Run time	1 days 7 hours 30 min 26 sec
CPU time	1 days 7 hours 23 min 34 sec
Validate state	Valid
Credit	2,813.19
Device peak FLOPS	2.99 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	236.24 MB
Peak swap size	247.32 MB
Peak disk usage	20.30 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
09:50:56 (2610): wrapper (7.17.26016): starting
09:50:56 (2610): wrapper (7.17.26016): starting
09:50:56 (2610): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58c7c523ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7af2e6245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7af2e629eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7af2e624527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7af2e62288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7af2e62297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7af2e62a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7af2e62ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7af2e62addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58c7c525c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58c7c527b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7af2e6245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7af2e62ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7af2e62f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7af2e632975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58c7c5251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58c7c521e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7af2e622a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7af2e622a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58c7c521aa3a]

Exiting...
09:54:00 (1431): wrapper (7.17.26016): starting
09:54:01 (1431): wrapper (7.17.26016): starting
09:54:01 (1431): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d6cb6c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x75141ce45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x75141ceadd75]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d6cb6c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d6cb6c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x75141ce45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75141ceecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75141cef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75141cf2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d6cb6c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d6cb6c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75141ce2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75141ce2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d6cb6c1aa3a]

Exiting...
09:57:26 (1426): wrapper (7.17.26016): starting
09:57:27 (1426): wrapper (7.17.26016): starting
09:57:27 (1426): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58315403ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x70172b245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x70172b29eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x70172b24527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x70172b2288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x70172b2297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x70172b2a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x70172b2ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x70172b2addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58315405c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58315407b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x70172b245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70172b2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70172b2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70172b32975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x583154051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58315401e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70172b22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70172b22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58315401aa3a]

Exiting...
09:59:38 (1443): wrapper (7.17.26016): starting
09:59:38 (1443): wrapper (7.17.26016): starting
09:59:38 (1443): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:28:55 (1443): cmdock exited; CPU time 112945.246938
14:28:55 (1443): called boinc_finish(0)

</stderr_txt>
]]>