Task 98952328

Name	ebola_RdRp_v1_sidock_00485532_r1_s-24.0_0
Workunit	69484141
Created	24 Jan 2026, 16:29:14 UTC
Sent	25 Jan 2026, 13:19:49 UTC
Report deadline	29 Jan 2026, 13:19:49 UTC
Received	26 Jan 2026, 6:54:41 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	82884
Run time	13 hours 4 min 26 sec
CPU time	13 hours 3 min 46 sec
Validate state	Valid
Credit	107.01
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	241.04 MB
Peak swap size	247.91 MB
Peak disk usage	20.25 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:42:39 (737000): wrapper (7.17.26016): starting
18:42:39 (737000): wrapper (7.17.26016): starting
18:42:39 (737000): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x57ecb763ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7273bb44cdf0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7273bb4b0262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x57ecb765c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x57ecb767b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7273bb44cdf0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7273bb4a79ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7273bb49c668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7273bb4e8f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7273bb4f4393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7273bb51d373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x57ecb7651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x57ecb761e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7273bb436ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7273bb436d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x57ecb761aa3a]

Exiting...
20:44:00 (1504): wrapper (7.17.26016): starting
20:44:01 (1504): wrapper (7.17.26016): starting
20:44:01 (1504): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:48:48 (2736): wrapper (7.17.26016): starting
20:48:48 (2736): wrapper (7.17.26016): starting
20:48:48 (2736): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x63811cc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7b7a9f7a5df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9495c) [0x7b7a9f7fa95c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12) [0x7b7a9f7a5cc2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x22) [0x7b7a9f78e4ac]
/lib/x86_64-linux-gnu/libc.so.6(+0x29291) [0x7b7a9f78f291]
/lib/x86_64-linux-gnu/libc.so.6(+0x9e465) [0x7b7a9f804465]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x19c) [0x7b7a9f8093dc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x63811cc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x63811cc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7b7a9f7a5df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7b7a9f8009ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7b7a9f7f5668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7b7a9f841f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7b7a9f84d393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7b7a9f876373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x63811cc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x63811cc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7b7a9f78fca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7b7a9f78fd65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x63811cc1aa3a]

Exiting...
20:49:40 (1518): wrapper (7.17.26016): starting
20:49:41 (1518): wrapper (7.17.26016): starting
20:49:41 (1518): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:54:27 (1518): cmdock exited; CPU time 39812.719428
07:54:27 (1518): called boinc_finish(0)

</stderr_txt>
]]>