Task 98726139

Name	ebola_RdRp_v1_sidock_00434452_r1_s-24.0_0
Workunit	69279821
Created	15 Jan 2026, 5:42:53 UTC
Sent	17 Jan 2026, 7:08:26 UTC
Report deadline	21 Jan 2026, 7:08:26 UTC
Received	19 Jan 2026, 5:44:37 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	74272
Run time	18 hours 10 min 25 sec
CPU time	18 hours 9 min 38 sec
Validate state	Valid
Credit	578.46
Device peak FLOPS	6.77 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	238.71 MB
Peak swap size	245.63 MB
Peak disk usage	20.74 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
09:15:15 (1891043): wrapper (7.17.26016): starting
09:15:16 (1891043): wrapper (7.17.26016): starting
09:15:16 (1891043): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:39:02 (1908723): wrapper (7.17.26016): starting
09:39:02 (1908723): wrapper (7.17.26016): starting
09:39:02 (1908723): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:42:12 (1911248): wrapper (7.17.26016): starting
09:42:12 (1911248): wrapper (7.17.26016): starting
09:42:12 (1911248): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:58:00 (1923597): wrapper (7.17.26016): starting
09:58:00 (1923597): wrapper (7.17.26016): starting
09:58:00 (1923597): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:59:05 (1924392): wrapper (7.17.26016): starting
09:59:05 (1924392): wrapper (7.17.26016): starting
09:59:05 (1924392): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:00:38 (1925766): wrapper (7.17.26016): starting
10:00:39 (1925766): wrapper (7.17.26016): starting
10:00:39 (1925766): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:08:58 (1932239): wrapper (7.17.26016): starting
10:08:58 (1932239): wrapper (7.17.26016): starting
10:08:58 (1932239): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:11:23 (1934177): wrapper (7.17.26016): starting
10:11:23 (1934177): wrapper (7.17.26016): starting
10:11:23 (1934177): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:16:56 (1938427): wrapper (7.17.26016): starting
10:16:56 (1938427): wrapper (7.17.26016): starting
10:16:56 (1938427): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:24:15 (177291): wrapper (7.17.26016): starting
01:24:15 (177291): wrapper (7.17.26016): starting
01:24:15 (177291): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:07:28 (391713): wrapper (7.17.26016): starting
06:07:28 (391713): wrapper (7.17.26016): starting
06:07:28 (391713): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:14:09 (518919): wrapper (7.17.26016): starting
09:14:09 (518919): wrapper (7.17.26016): starting
09:14:09 (518919): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:38:09 (539439): wrapper (7.17.26016): starting
09:38:09 (539439): wrapper (7.17.26016): starting
09:38:09 (539439): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:42:53 (543351): wrapper (7.17.26016): starting
09:42:53 (543351): wrapper (7.17.26016): starting
09:42:53 (543351): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:54:06 (553411): wrapper (7.17.26016): starting
09:54:06 (553411): wrapper (7.17.26016): starting
09:54:06 (553411): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:55:43 (554714): wrapper (7.17.26016): starting
09:55:43 (554714): wrapper (7.17.26016): starting
09:55:43 (554714): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:59:16 (557527): wrapper (7.17.26016): starting
09:59:17 (557527): wrapper (7.17.26016): starting
09:59:17 (557527): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:29:51 (581573): wrapper (7.17.26016): starting
10:29:52 (581573): wrapper (7.17.26016): starting
10:29:52 (581573): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:01:39 (607214): wrapper (7.17.26016): starting
11:01:39 (607214): wrapper (7.17.26016): starting
11:01:39 (607214): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:29:05 (629660): wrapper (7.17.26016): starting
11:29:05 (629660): wrapper (7.17.26016): starting
11:29:05 (629660): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:34:01 (633563): wrapper (7.17.26016): starting
11:34:01 (633563): wrapper (7.17.26016): starting
11:34:01 (633563): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:38:20 (636821): wrapper (7.17.26016): starting
11:38:20 (636821): wrapper (7.17.26016): starting
11:38:20 (636821): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:51:08 (694066): wrapper (7.17.26016): starting
12:51:08 (694066): wrapper (7.17.26016): starting
12:51:08 (694066): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x6413de03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x458d0) [0x78a939e458d0]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c) [0x78a939ea49bc]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e) [0x78a939e4579e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x2c) [0x78a939e288cd]
/lib/x86_64-linux-gnu/libc.so.6(+0x29909) [0x78a939e29909]
/lib/x86_64-linux-gnu/libc.so.6(+0xaef65) [0x78a939eaef65]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x174) [0x78a939eb4224]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x6413de05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x6413de07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x458d0) [0x78a939e458d0]
/lib/x86_64-linux-gnu/libc.so.6(+0xaafe2) [0x78a939eaafe2]
/lib/x86_64-linux-gnu/libc.so.6(+0x9eae3) [0x78a939e9eae3]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x32) [0x78a939ef4932]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17) [0x78a939f02657]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4a) [0x78a939f336ba]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x6413de051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x6413de01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a578) [0x78a939e2a578]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b) [0x78a939e2a63b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x6413de01aa3a]

Exiting...
22:29:22 (3252): wrapper (7.17.26016): starting
22:29:22 (3252): wrapper (7.17.26016): starting
22:29:22 (3252): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:35:04 (199508): wrapper (7.17.26016): starting
02:35:04 (199508): wrapper (7.17.26016): starting
02:35:04 (199508): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:44:23 (199508): cmdock exited; CPU time 14814.642922
06:44:23 (199508): called boinc_finish(0)

</stderr_txt>
]]>