Task 98681861

Name ebola_RdRp_v1_sidock_00423384_r2_s-24.0_0
Workunit 69235550
Created 15 Jan 2026, 5:02:40 UTC
Sent 15 Jan 2026, 17:10:06 UTC
Report deadline 19 Jan 2026, 17:10:06 UTC
Received 16 Jan 2026, 7:42:26 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4531
Run time 12 hours 23 min 14 sec
CPU time 12 hours 23 min 2 sec
Validate state Valid
Credit 365.55
Device peak FLOPS 5.26 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 237.57 MB
Peak swap size 244.87 MB
Peak disk usage 20.41 MB

Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:20:07 (2115329): wrapper (7.17.26016): starting
12:20:08 (2115329): wrapper (7.17.26016): starting
12:20:08 (2115329): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55e89a83ff8c]
/lib64/libc.so.6(+0x42910) [0x7f5ad8a42910]
/lib64/libc.so.6(+0x9dd3c) [0x7f5ad8a9dd3c]
/lib64/libc.so.6(gsignal+0x18) [0x7f5ad8a427b6]
/lib64/libc.so.6(abort+0x2a) [0x7f5ad8a2934b]
/lib64/libc.so.6(+0x2a3ad) [0x7f5ad8a2a3ad]
/lib64/libc.so.6(+0xa8b77) [0x7f5ad8aa8b77]
/lib64/libc.so.6(+0xa8ba1) [0x7f5ad8aa8ba1]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55e89a85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55e89a87b8e4]
/lib64/libc.so.6(+0x42910) [0x7f5ad8a42910]
/lib64/libc.so.6(+0xa4812) [0x7f5ad8aa4812]
/lib64/libc.so.6(+0x98008) [0x7f5ad8a98008]
/lib64/libc.so.6(clock_nanosleep+0x30) [0x7f5ad8ae8fbe]
/lib64/libc.so.6(nanosleep+0x19) [0x7f5ad8af4fe7]
/lib64/libc.so.6(usleep+0x49) [0x7f5ad8b20717]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55e89a851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55e89a81e784]
/lib64/libc.so.6(+0x2b2fb) [0x7f5ad8a2b2fb]
/lib64/libc.so.6(__libc_start_main+0x8d) [0x7f5ad8a2b3cb]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55e89a81aa3a]

Exiting...
19:38:30 (2663472): wrapper (7.17.26016): starting
19:38:30 (2663472): wrapper (7.17.26016): starting
19:38:30 (2663472): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:39:53 (5680): wrapper (7.17.26016): starting
23:39:53 (5680): wrapper (7.17.26016): starting
23:39:53 (5680): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:42:12 (5680): cmdock exited; CPU time 9657.492982
02:42:12 (5680): called boinc_finish(0)

</stderr_txt>
]]>


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