Task 98619941

Name ebola_RdRp_v1_sidock_00410434_r1_s-24.0_0
Workunit 69183749
Created 11 Jan 2026, 17:47:05 UTC
Sent 13 Jan 2026, 6:34:42 UTC
Report deadline 17 Jan 2026, 6:34:42 UTC
Received 14 Jan 2026, 15:40:28 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80660
Run time 6 hours 55 min 57 sec
CPU time 5 hours 40 min 9 sec
Validate state Valid
Credit 580.52
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.65 MB
Peak swap size 247.13 MB
Peak disk usage 20.15 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:34:50 (209312): wrapper (7.17.26016): starting
22:34:50 (209312): wrapper (7.17.26016): starting
22:34:50 (209312): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/20/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x562be423ff8c]
/usr/lib/libc.so.6(+0x44aa0) [0x7fbac9844aa0]
/usr/lib/libc.so.6(pthread_kill+0x12b) [0x7fbac98ac56b]
/usr/lib/libc.so.6(gsignal+0x18) [0x7fbac9844968]
/usr/lib/libc.so.6(abort+0x27) [0x7fbac982560f]
/usr/lib/libc.so.6(+0x26876) [0x7fbac9826876]
/usr/lib/libc.so.6(+0xb73e7) [0x7fbac98b73e7]
/usr/lib/libc.so.6(+0xb7401) [0x7fbac98b7401]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x562be425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x562be427b8e4]
/usr/lib/libc.so.6(+0x44aa0) [0x7fbac9844aa0]
/usr/lib/libc.so.6(+0xb2e62) [0x7fbac98b2e62]
/usr/lib/libc.so.6(+0xa644f) [0x7fbac98a644f]
/usr/lib/libc.so.6(clock_nanosleep+0x2e) [0x7fbac98fb87e]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7fbac990baf7]
/usr/lib/libc.so.6(usleep+0x4b) [0x7fbac9940e9b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x562be4251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x562be421e784]
/usr/lib/libc.so.6(+0x27b0b) [0x7fbac9827b0b]
/usr/lib/libc.so.6(__libc_start_main+0x8b) [0x7fbac9827bbb]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x562be421aa3a]

Exiting...
16:13:31 (9054): wrapper (7.17.26016): starting
16:13:31 (9054): wrapper (7.17.26016): starting
16:13:31 (9054): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/20/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:29:59 (16500): wrapper (7.17.26016): starting
07:29:59 (16500): wrapper (7.17.26016): starting
07:29:59 (16500): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/20/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:40:12 (16500): cmdock exited; CPU time 588.661192
07:40:12 (16500): called boinc_finish(0)

</stderr_txt>
]]>


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