Task 98619892

Name ebola_RdRp_v1_sidock_00410421_r2_s-24.0_0
Workunit 69183698
Created 11 Jan 2026, 17:47:03 UTC
Sent 13 Jan 2026, 6:34:43 UTC
Report deadline 17 Jan 2026, 6:34:43 UTC
Received 14 Jan 2026, 15:56:23 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80660
Run time 7 hours 7 min 47 sec
CPU time 5 hours 51 min 8 sec
Validate state Valid
Credit 590.92
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.70 MB
Peak swap size 248.05 MB
Peak disk usage 20.16 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:34:58 (209352): wrapper (7.17.26016): starting
22:34:58 (209352): wrapper (7.17.26016): starting
22:34:58 (209352): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x56395923ff8c]
/usr/lib/libc.so.6(+0x44aa0) [0x7f8410c44aa0]
/usr/lib/libc.so.6(pthread_kill+0x12b) [0x7f8410cac56b]
/usr/lib/libc.so.6(gsignal+0x18) [0x7f8410c44968]
/usr/lib/libc.so.6(abort+0x27) [0x7f8410c2560f]
/usr/lib/libc.so.6(+0x26876) [0x7f8410c26876]
/usr/lib/libc.so.6(+0xb73e7) [0x7f8410cb73e7]
/usr/lib/libc.so.6(+0xb7401) [0x7f8410cb7401]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x56395925c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x56395927b8e4]
/usr/lib/libc.so.6(+0x44aa0) [0x7f8410c44aa0]
/usr/lib/libc.so.6(+0xb2e62) [0x7f8410cb2e62]
/usr/lib/libc.so.6(+0xa644f) [0x7f8410ca644f]
/usr/lib/libc.so.6(clock_nanosleep+0x2e) [0x7f8410cfb87e]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f8410d0baf7]
/usr/lib/libc.so.6(usleep+0x4b) [0x7f8410d40e9b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x563959251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x56395921e784]
/usr/lib/libc.so.6(+0x27b0b) [0x7f8410c27b0b]
/usr/lib/libc.so.6(__libc_start_main+0x8b) [0x7f8410c27bbb]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x56395921aa3a]

Exiting...
16:13:31 (9071): wrapper (7.17.26016): starting
16:13:31 (9071): wrapper (7.17.26016): starting
16:13:31 (9071): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:29:59 (16507): wrapper (7.17.26016): starting
07:29:59 (16507): wrapper (7.17.26016): starting
07:29:59 (16507): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:56:08 (16507): cmdock exited; CPU time 1510.961328
07:56:08 (16507): called boinc_finish(0)

</stderr_txt>
]]>


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