Task 98601789

Name ebola_RdRp_v1_sidock_00405905_r1_s-24.0_0
Workunit 69165633
Created 11 Jan 2026, 17:30:56 UTC
Sent 12 Jan 2026, 13:53:46 UTC
Report deadline 16 Jan 2026, 13:53:46 UTC
Received 16 Jan 2026, 11:13:02 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80428
Run time 13 hours 0 min 18 sec
CPU time 13 hours 0 min 18 sec
Validate state Valid
Credit 575.92
Device peak FLOPS 7.05 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.88 MB
Peak swap size 247.26 MB
Peak disk usage 20.45 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
16:52:32 (10854): wrapper (7.17.26016): starting
16:52:32 (10854): wrapper (7.17.26016): starting
16:52:32 (10854): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56115643ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f62dccfb520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f62dcd5e3fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56115645c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56115647b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f62dccfb520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f62dcd9e7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f62dcda3677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f62dcdd4f9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561156451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56115641e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f62dcce2d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f62dcce2e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56115641aa3a]

Exiting...
08:52:34 (1772): wrapper (7.17.26016): starting
08:52:34 (1772): wrapper (7.17.26016): starting
08:52:34 (1772): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b08c63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f34d92a8520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f34d930b3fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b08c65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b08c67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f34d92a8520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f34d934b7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f34d9350677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f34d9381f9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b08c651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b08c61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f34d928fd90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f34d928fe40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b08c61aa3a]

Exiting...
08:27:52 (1763): wrapper (7.17.26016): starting
08:27:53 (1763): wrapper (7.17.26016): starting
08:27:53 (1763): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:18:03 (1763): cmdock exited; CPU time 9692.171676
12:18:03 (1763): called boinc_finish(0)

</stderr_txt>
]]>


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