Task 98601772

Name ebola_RdRp_v1_sidock_00405896_r2_s-24.0_0
Workunit 69165598
Created 11 Jan 2026, 17:30:56 UTC
Sent 12 Jan 2026, 13:53:46 UTC
Report deadline 16 Jan 2026, 13:53:46 UTC
Received 16 Jan 2026, 11:18:56 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80428
Run time 12 hours 58 min 59 sec
CPU time 12 hours 58 min 59 sec
Validate state Valid
Credit 575.48
Device peak FLOPS 7.05 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.91 MB
Peak swap size 247.07 MB
Peak disk usage 20.25 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
17:02:56 (11698): wrapper (7.17.26016): starting
17:02:56 (11698): wrapper (7.17.26016): starting
17:02:56 (11698): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557b9ba3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f3a8a8dd520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f3a8a9403fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557b9ba5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557b9ba7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f3a8a8dd520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f3a8a9807f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f3a8a985677]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7f3a8a9855ae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x557b9ba51a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557b9ba1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f3a8a8c4d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f3a8a8c4e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557b9ba1aa3a]

Exiting...
08:52:34 (1773): wrapper (7.17.26016): starting
08:52:34 (1773): wrapper (7.17.26016): starting
08:52:34 (1773): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55dd5dc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ff6b85c5520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7ff6b86283fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55dd5dc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55dd5dc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ff6b85c5520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7ff6b86687f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7ff6b866d677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7ff6b869ef9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55dd5dc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55dd5dc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7ff6b85acd90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7ff6b85ace40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55dd5dc1aa3a]

Exiting...
08:27:52 (1764): wrapper (7.17.26016): starting
08:27:53 (1764): wrapper (7.17.26016): starting
08:27:53 (1764): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:23:58 (1764): cmdock exited; CPU time 9939.609440
12:23:58 (1764): called boinc_finish(0)

</stderr_txt>
]]>


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