Task 98481270

Name ebola_RdRp_v1_sidock_00379257_r4_s-24.0_0
Workunit 69059044
Created 5 Jan 2026, 15:27:21 UTC
Sent 8 Jan 2026, 7:49:44 UTC
Report deadline 12 Jan 2026, 7:49:44 UTC
Received 9 Jan 2026, 1:13:58 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 82041
Run time 12 hours 57 min 32 sec
CPU time 12 hours 41 min 6 sec
Validate state Valid
Credit 632.77
Device peak FLOPS 3.55 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.51 MB
Peak swap size 247.67 MB
Peak disk usage 20.20 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:05:42 (29261): wrapper (7.17.26016): starting
19:05:42 (29261): wrapper (7.17.26016): starting
19:05:42 (29261): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5db6f683ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x782ac2845330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x782ac28add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5db6f685c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5db6f687b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x782ac2845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x782ac28ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x782ac28f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x782ac292975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5db6f6851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5db6f681e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x782ac282a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x782ac282a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5db6f681aa3a]

Exiting...
19:57:21 (1491): wrapper (7.17.26016): starting
19:57:21 (1491): wrapper (7.17.26016): starting
19:57:21 (1491): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:58:09 (1496): wrapper (7.17.26016): starting
19:58:09 (1496): wrapper (7.17.26016): starting
19:58:09 (1496): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:58:59 (1458): wrapper (7.17.26016): starting
19:58:59 (1458): wrapper (7.17.26016): starting
19:58:59 (1458): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:29:35 (1429): wrapper (7.17.26016): starting
21:29:35 (1429): wrapper (7.17.26016): starting
21:29:35 (1429): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:45:56 (1431): wrapper (7.17.26016): starting
22:45:56 (1431): wrapper (7.17.26016): starting
22:45:56 (1431): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:48:43 (1448): wrapper (7.17.26016): starting
22:48:43 (1448): wrapper (7.17.26016): starting
22:48:43 (1448): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:13:47 (1448): cmdock exited; CPU time 38663.119721
10:13:47 (1448): called boinc_finish(0)

</stderr_txt>
]]>


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