Task 98462338

Name	ebola_RdRp_v1_sidock_00374542_r4_s-24.0_0
Workunit	69040184
Created	5 Jan 2026, 15:10:46 UTC
Sent	7 Jan 2026, 17:07:46 UTC
Report deadline	11 Jan 2026, 17:07:46 UTC
Received	7 Jan 2026, 21:48:57 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	81586
Run time	2 hours 54 min 33 sec
CPU time	2 hours 53 min 37 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	237.65 MB
Peak swap size	243.74 MB
Peak disk usage	20.00 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
18:34:17 (2744749): wrapper (7.17.26016): starting
18:34:17 (2744749): wrapper (7.17.26016): starting
18:34:17 (2744749): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/74/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55fc5283ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7efe8fb30050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7efe8fb7eeec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7efe8fb2ffb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7efe8fb1a472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7efe8fb7342f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7efe8fb8886a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7efe8fb8a5f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7efe8fb8cf4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55fc5285c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55fc5287b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7efe8fb30050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7efe8fbc3545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7efe8fbc7e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7efe8fbf3245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55fc52851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55fc5281e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7efe8fb1b24a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7efe8fb1b305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55fc5281aa3a]

Exiting...
18:52:45 (2748673): wrapper (7.17.26016): starting
18:52:46 (2748673): wrapper (7.17.26016): starting
18:52:46 (2748673): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/74/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:53:39 (2749125): wrapper (7.17.26016): starting
18:53:39 (2749125): wrapper (7.17.26016): starting
18:53:39 (2749125): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/74/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:59:58 (2750130): wrapper (7.17.26016): starting
18:59:58 (2750130): wrapper (7.17.26016): starting
18:59:58 (2750130): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/74/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x559ca543ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fe024e9b050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7fe024ee9eec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fe024e9afb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fe024e85472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7fe024ede42f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7fe024ef386a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7fe024ef55f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fe024ef7f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x559ca545c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x559ca547b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fe024e9b050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fe024f2e545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fe024f32e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fe024f5e245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x559ca5451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x559ca541e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fe024e8624a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fe024e86305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x559ca541aa3a]

Exiting...
19:00:19 (2750653): wrapper (7.17.26016): starting
19:00:19 (2750653): wrapper (7.17.26016): starting
19:00:19 (2750653): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/74/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:01:09 (2751048): wrapper (7.17.26016): starting
19:01:10 (2751048): wrapper (7.17.26016): starting
19:01:10 (2751048): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/74/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ea2623ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fd3071cd050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7fd307229efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ea2625c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ea2627b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fd3071cd050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fd307260545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fd307264e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fd307290245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ea26251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ea2621e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fd3071b824a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fd3071b8305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ea2621aa3a]

Exiting...
21:35:16 (2770386): wrapper (7.17.26016): starting
21:35:16 (2770386): wrapper (7.17.26016): starting
21:35:16 (2770386): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/74/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x563ac103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fc3dae8c050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7fc3daedaeec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fc3dae8bfb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fc3dae76472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7fc3daecf42f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7fc3daee486a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7fc3daee65f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fc3daee8f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x563ac105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x563ac107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fc3dae8c050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fc3daf1f545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fc3daf23e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fc3daf4f245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563ac1051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x563ac101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fc3dae7724a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fc3dae77305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x563ac101aa3a]

Exiting...
21:39:29 (2791967): wrapper (7.17.26016): starting
21:39:38 (2791967): wrapper (7.17.26016): starting
21:39:38 (2791967): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/74/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:40:20 (2791967): cmdock exited; CPU time 41.131228
21:40:20 (2791967): called boinc_finish(0)

</stderr_txt>
]]>