Task 98461964

Name	ebola_RdRp_v1_sidock_00374448_r4_s-24.0_0
Workunit	69039808
Created	5 Jan 2026, 15:10:27 UTC
Sent	7 Jan 2026, 16:44:38 UTC
Report deadline	11 Jan 2026, 16:44:38 UTC
Received	7 Jan 2026, 21:48:57 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	81586
Run time	4 hours 43 min 11 sec
CPU time	4 hours 40 min 50 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.13 MB
Peak swap size	246.20 MB
Peak disk usage	19.99 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
16:44:45 (2731827): wrapper (7.17.26016): starting
16:44:45 (2731827): wrapper (7.17.26016): starting
16:44:45 (2731827): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/128/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x556e6403ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f16fdfa6050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7f16fe002efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x556e6405c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x556e6407b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f16fdfa6050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f16fe039545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f16fe03de53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f16fe069245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556e64051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x556e6401e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f16fdf9124a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f16fdf91305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x556e6401aa3a]

Exiting...
18:52:45 (2748619): wrapper (7.17.26016): starting
18:52:46 (2748619): wrapper (7.17.26016): starting
18:52:46 (2748619): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/128/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56223fe3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f73c0624050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7f73c0680efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56223fe5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56223fe7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f73c0624050]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x56223fe3aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f73c0624050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f73c06b7545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f73c06bbe53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f73c06e7245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56223fe51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56223fe1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f73c060f24a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f73c060f305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56223fe1aa3a]

Exiting...
19:00:19 (2750630): wrapper (7.17.26016): starting
19:00:19 (2750630): wrapper (7.17.26016): starting
19:00:19 (2750630): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/128/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x556a3683ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7eff410a7050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7eff410f5eec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7eff410a6fb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7eff41091472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7eff410ea42f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7eff410ff86a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7eff411015f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7eff41103f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x556a3685c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x556a3687b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7eff410a7050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7eff4113a545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7eff4113ee53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7eff4116a245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556a36851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x556a3681e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7eff4109224a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7eff41092305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x556a3681aa3a]

Exiting...
21:35:16 (2770377): wrapper (7.17.26016): starting
21:35:16 (2770377): wrapper (7.17.26016): starting
21:35:16 (2770377): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/128/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560814c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fdae41f5050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7fdae4243eec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fdae41f4fb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fdae41df472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7fdae423842f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7fdae424d86a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7fdae424f5f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fdae4251f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560814c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560814c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fdae41f5050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fdae4288545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fdae428ce53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fdae42b8245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560814c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560814c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fdae41e024a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fdae41e0305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560814c1aa3a]

Exiting...
21:39:29 (2791958): wrapper (7.17.26016): starting
21:39:38 (2791958): wrapper (7.17.26016): starting
21:39:38 (2791958): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/128/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:40:19 (2791958): cmdock exited; CPU time 40.143868
21:40:19 (2791958): called boinc_finish(0)

</stderr_txt>
]]>