Task 98461957

Name	ebola_RdRp_v1_sidock_00374447_r3_s-24.0_0
Workunit	69039803
Created	5 Jan 2026, 15:10:27 UTC
Sent	7 Jan 2026, 16:44:38 UTC
Report deadline	11 Jan 2026, 16:44:38 UTC
Received	7 Jan 2026, 21:48:57 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	81586
Run time	4 hours 44 min 12 sec
CPU time	4 hours 44 min 12 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	239.27 MB
Peak swap size	245.41 MB
Peak disk usage	20.00 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
16:44:47 (2731837): wrapper (7.17.26016): starting
16:44:47 (2731837): wrapper (7.17.26016): starting
16:44:47 (2731837): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/130/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f59e43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fd5de19e050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7fd5de1faefa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f59e45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f59e47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fd5de19e050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fd5de231545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fd5de235e53]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3a)[0x7fd5de235d8a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55f59e451a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f59e41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fd5de18924a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fd5de189305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f59e41aa3a]

Exiting...
18:52:45 (2748629): wrapper (7.17.26016): starting
18:52:46 (2748629): wrapper (7.17.26016): starting
18:52:46 (2748629): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/130/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b72363ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f8f6704d050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7f8f6709beec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f8f6704cfb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f8f67037472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7f8f6709042f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7f8f670a586a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7f8f670a75f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f8f670a9f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b72365c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b72367b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f8f6704d050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f8f670e0545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f8f670e4e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f8f67110245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b723651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b72361e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f8f6703824a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f8f67038305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b72361aa3a]

Exiting...
19:00:19 (2750633): wrapper (7.17.26016): starting
19:00:19 (2750633): wrapper (7.17.26016): starting
19:00:19 (2750633): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/130/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557ceb63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f83a69f5050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7f83a6a51efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557ceb65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557ceb67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f83a69f5050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f83a6a88545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f83a6a8ce53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f83a6ab8245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557ceb651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557ceb61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f83a69e024a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f83a69e0305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557ceb61aa3a]

Exiting...
21:35:16 (2770379): wrapper (7.17.26016): starting
21:35:16 (2770379): wrapper (7.17.26016): starting
21:35:16 (2770379): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/130/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5594ec63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f42b185c050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7f42b18aaeec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f42b185bfb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f42b1846472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7f42b189f42f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7f42b18b486a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7f42b18b65f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f42b18b8f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5594ec65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5594ec67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f42b185c050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f42b18ef545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f42b18f3e53]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3a)[0x7f42b18f3d8a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x5594ec651a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5594ec61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f42b184724a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f42b1847305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5594ec61aa3a]

Exiting...
21:39:29 (2791960): wrapper (7.17.26016): starting
21:39:38 (2791960): wrapper (7.17.26016): starting
21:39:38 (2791960): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/130/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f611a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f94a4318050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7f94a4366eec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f94a4317fb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f94a4302472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7f94a435b42f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7f94a437086a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7f94a43725f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f94a4374f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f611a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f611a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f94a4318050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f94a43ab545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f94a43afe53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f94a43db285]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f611a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f611a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f94a430324a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f94a4303305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f611a1aa3a]

Exiting...
21:43:35 (2962): wrapper (7.17.26016): starting
21:43:35 (2962): wrapper (7.17.26016): starting
21:43:35 (2962): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/130/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:43:45 (2962): cmdock exited; CPU time 8.537164
21:43:46 (2962): called boinc_finish(0)

</stderr_txt>
]]>