Task 98453361

Name	ebola_RdRp_v1_sidock_00372308_r4_s-24.0_0
Workunit	69031248
Created	5 Jan 2026, 15:03:04 UTC
Sent	7 Jan 2026, 10:06:53 UTC
Report deadline	11 Jan 2026, 10:06:53 UTC
Received	7 Jan 2026, 23:35:06 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	81588
Run time	10 hours 53 min 22 sec
CPU time	10 hours 46 min 56 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	238.88 MB
Peak swap size	245.03 MB
Peak disk usage	20.18 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
12:15:38 (2076003): wrapper (7.17.26016): starting
12:15:38 (2076003): wrapper (7.17.26016): starting
12:15:38 (2076003): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/67/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c8f423ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fba917c7050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7fba91823efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c8f425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c8f427b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fba917c7050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fba9185a545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fba9185ee53]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3a)[0x7fba9185ed8a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55c8f4251a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c8f421e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fba917b224a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fba917b2305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c8f421aa3a]

Exiting...
23:09:58 (2194): wrapper (7.17.26016): starting
23:09:58 (2194): wrapper (7.17.26016): starting
23:09:58 (2194): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/67/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55dc0ba3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f7fb4f5f050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7f7fb4fadeec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f7fb4f5efb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f7fb4f49472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7f7fb4fa242f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7f7fb4fb786a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7f7fb4fb95f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f7fb4fbbf4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55dc0ba5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55dc0ba7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f7fb4f5f050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f7fb4ff2545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f7fb4ff6e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f7fb5022245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55dc0ba51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55dc0ba1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f7fb4f4a24a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f7fb4f4a305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55dc0ba1aa3a]

Exiting...
23:22:15 (2295): wrapper (7.17.26016): starting
23:22:15 (2295): wrapper (7.17.26016): starting
23:22:15 (2295): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/67/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x555d2a83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f57adc18050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7f57adc66eec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f57adc17fb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f57adc02472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7f57adc5b42f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7f57adc7086a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7f57adc725f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f57adc74f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x555d2a85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x555d2a87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f57adc18050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f57adcab545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f57adcafe53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f57adcdb245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x555d2a851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x555d2a81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f57adc0324a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f57adc03305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x555d2a81aa3a]

Exiting...
23:30:29 (2228): wrapper (7.17.26016): starting
23:30:30 (2228): wrapper (7.17.26016): starting
23:30:30 (2228): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/67/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:31:21 (2228): cmdock exited; CPU time 50.562687
23:31:21 (2228): called boinc_finish(0)

</stderr_txt>
]]>