Task 98452809

Name	ebola_RdRp_v1_sidock_00372169_r4_s-24.0_0
Workunit	69030692
Created	5 Jan 2026, 15:02:33 UTC
Sent	7 Jan 2026, 9:33:02 UTC
Report deadline	11 Jan 2026, 9:33:02 UTC
Received	7 Jan 2026, 21:48:57 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	81586
Run time	11 hours 33 min 31 sec
CPU time	11 hours 29 min 7 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	239.57 MB
Peak swap size	245.53 MB
Peak disk usage	20.16 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
09:57:56 (2683438): wrapper (7.17.26016): starting
09:57:56 (2683438): wrapper (7.17.26016): starting
09:57:56 (2683438): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/38/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x562e9463ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f759b0f8050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7f759b154efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x562e9465c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x562e9467b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f759b0f8050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f759b18b545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f759b18fe53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f759b1bb245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x562e94651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x562e9461e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f759b0e324a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f759b0e3305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x562e9461aa3a]

Exiting...
18:52:45 (2748539): wrapper (7.17.26016): starting
18:52:45 (2748539): wrapper (7.17.26016): starting
18:52:45 (2748539): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/38/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558df163ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7efed23f8050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7efed2454efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558df165c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558df167b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7efed23f8050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7efed248b545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7efed248fe53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7efed24bb245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558df1651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558df161e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7efed23e324a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7efed23e3305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558df161aa3a]

Exiting...
19:00:18 (2750579): wrapper (7.17.26016): starting
19:00:19 (2750579): wrapper (7.17.26016): starting
19:00:19 (2750579): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/38/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55fca463ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f4b8f80e050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7f4b8f86aefa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55fca465c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55fca467b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f4b8f80e050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f4b8f8a1545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f4b8f8a5e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f4b8f8d1245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55fca4651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55fca461e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f4b8f7f924a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f4b8f7f9305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55fca461aa3a]

Exiting...
21:35:15 (2770329): wrapper (7.17.26016): starting
21:35:16 (2770329): wrapper (7.17.26016): starting
21:35:16 (2770329): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/38/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f68863ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fd0bb7d1050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7fd0bb81feec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fd0bb7d0fb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fd0bb7bb472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7fd0bb81442f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7fd0bb82986a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7fd0bb82b5f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fd0bb82df4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f68865c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f68867b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fd0bb7d1050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fd0bb864545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fd0bb868e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fd0bb894245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f688651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f68861e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fd0bb7bc24a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fd0bb7bc305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f68861aa3a]

Exiting...
21:39:29 (2791910): wrapper (7.17.26016): starting
21:39:34 (2791910): wrapper (7.17.26016): starting
21:39:34 (2791910): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/38/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:40:05 (2791910): cmdock exited; CPU time 29.164024
21:40:05 (2791910): called boinc_finish(0)

</stderr_txt>
]]>