Task 98144384

Name ebola_RdRp_v1_sidock_00283779_r2_s-24.0_2
Workunit 68677130
Created 25 Dec 2025, 23:00:43 UTC
Sent 26 Dec 2025, 8:40:14 UTC
Report deadline 30 Dec 2025, 8:40:14 UTC
Received 27 Dec 2025, 5:32:07 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 78592
Run time 10 hours 8 min 58 sec
CPU time 10 hours 8 min 52 sec
Validate state Valid
Credit 482.10
Device peak FLOPS 8.09 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.80 MB
Peak swap size 246.55 MB
Peak disk usage 20.12 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:59:19 (134743): wrapper (7.17.26016): starting
02:59:19 (134743): wrapper (7.17.26016): starting
02:59:19 (134743): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x637cf443ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x703f30c45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x703f30c9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x703f30c4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x703f30c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x703f30c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x703f30ca8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x703f30cab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x703f30caddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x637cf445c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x637cf447b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x703f30c45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x703f30cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x703f30cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x703f30d2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x637cf4451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x637cf441e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x703f30c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x703f30c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x637cf441aa3a]

Exiting...
10:50:17 (2522): wrapper (7.17.26016): starting
10:50:17 (2522): wrapper (7.17.26016): starting
10:50:17 (2522): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (88823): wrapper (7.17.26016): starting
21:00:02 (88823): wrapper (7.17.26016): starting
21:00:02 (88823): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:31:55 (88823): cmdock exited; CPU time 8639.644551
23:31:55 (88823): called boinc_finish(0)

</stderr_txt>
]]>


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