Task 98125633

Name	ebola_RdRp_v1_sidock_00298312_r2_s-24.0_0
Workunit	68735262
Created	20 Dec 2025, 20:43:59 UTC
Sent	25 Dec 2025, 8:08:23 UTC
Report deadline	29 Dec 2025, 8:08:23 UTC
Received	27 Dec 2025, 3:07:36 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54588
Run time	7 hours 55 min 10 sec
CPU time	7 hours 54 min 59 sec
Validate state	Valid
Credit	506.39
Device peak FLOPS	9.82 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	238.13 MB
Peak swap size	245.75 MB
Peak disk usage	20.34 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
02:16:41 (65519): wrapper (7.17.26016): starting
02:16:41 (65519): wrapper (7.17.26016): starting
02:16:41 (65519): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a1e1943ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x794990445330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x79499049eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x79499044527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7949904288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7949904297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7949904a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7949904ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7949904addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a1e1945c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a1e1947b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x794990445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7949904ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7949904f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x79499052975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a1e19451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a1e1941e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x79499042a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x79499042a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a1e1941aa3a]

Exiting...
11:31:11 (2671): wrapper (7.17.26016): starting
11:31:11 (2671): wrapper (7.17.26016): starting
11:31:11 (2671): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:58:34 (2709): wrapper (7.17.26016): starting
10:58:34 (2709): wrapper (7.17.26016): starting
10:58:34 (2709): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x60475323ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7aa1ea845330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7aa1ea8add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x60475325c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x60475327b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7aa1ea845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7aa1ea8ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7aa1ea8f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7aa1ea92975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x604753251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x60475321e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7aa1ea82a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7aa1ea82a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x60475321aa3a]

Exiting...
21:00:02 (81204): wrapper (7.17.26016): starting
21:00:02 (81204): wrapper (7.17.26016): starting
21:00:02 (81204): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:07:21 (81204): cmdock exited; CPU time 438.426638
21:07:21 (81204): called boinc_finish(0)

</stderr_txt>
]]>