Task 98055947

Name	ebola_RdRp_v1_sidock_00280903_r2_s-24.0_0
Workunit	68665626
Created	20 Dec 2025, 19:43:24 UTC
Sent	21 Dec 2025, 0:00:10 UTC
Report deadline	25 Dec 2025, 0:00:10 UTC
Received	26 Dec 2025, 8:52:46 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	80661
Run time	10 hours 0 min 7 sec
CPU time	10 hours 0 min 2 sec
Validate state	Valid
Credit	705.27
Device peak FLOPS	7.29 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.82 MB
Peak swap size	247.90 MB
Peak disk usage	20.31 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
20:00:58 (1884): wrapper (7.17.26016): starting
20:00:58 (1884): wrapper (7.17.26016): starting
20:00:58 (1884): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x557bbea3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f8f1869cdf0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7f8f18700262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x557bbea5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x557bbea7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f8f1869cdf0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7f8f186f79ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7f8f186ec668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7f8f18738f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7f8f18744393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7f8f1876d373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x557bbea51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x557bbea1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8f18686ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7f8f18686d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x557bbea1aa3a]

Exiting...
03:39:15 (32623): wrapper (7.17.26016): starting
03:39:15 (32623): wrapper (7.17.26016): starting
03:39:15 (32623): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5643e7c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7fd5c61f0df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9495c) [0x7fd5c624595c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12) [0x7fd5c61f0cc2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x22) [0x7fd5c61d94ac]
/lib/x86_64-linux-gnu/libc.so.6(+0x29291) [0x7fd5c61da291]
/lib/x86_64-linux-gnu/libc.so.6(+0x9e465) [0x7fd5c624f465]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x19c) [0x7fd5c62543dc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5643e7c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5643e7c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7fd5c61f0df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7fd5c624b9ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7fd5c6240668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7fd5c628cf7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7fd5c6298393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7fd5c62c1373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5643e7c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5643e7c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7fd5c61daca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7fd5c61dad65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5643e7c1aa3a]

Exiting...
20:00:58 (1836): wrapper (7.17.26016): starting
20:00:59 (1836): wrapper (7.17.26016): starting
20:00:59 (1836): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:52:36 (1836): cmdock exited; CPU time 27015.363213
03:52:36 (1836): called boinc_finish(0)

</stderr_txt>
]]>