Task 97952358

Name ebola_RdRp_v1_sidock_00259732_r3_s-24.0_0
Workunit 68580943
Created 11 Dec 2025, 22:36:28 UTC
Sent 16 Dec 2025, 7:14:46 UTC
Report deadline 20 Dec 2025, 7:14:46 UTC
Received 17 Dec 2025, 3:00:29 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 76200
Run time 6 hours 23 min 55 sec
CPU time 6 hours 23 min 48 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 10.20 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.33 MB
Peak swap size 246.49 MB
Peak disk usage 20.19 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:44:09 (129414): wrapper (7.17.26016): starting
01:44:09 (129414): wrapper (7.17.26016): starting
01:44:09 (129414): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a077503ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x795cdfc45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x795cdfc9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x795cdfc4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x795cdfc288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x795cdfc297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x795cdfca8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x795cdfcab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x795cdfcaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a077505c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a077507b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x795cdfc45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x795cdfcecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x795cdfcf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x795cdfd2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a0775051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a077501e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x795cdfc2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x795cdfc2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a077501aa3a]

Exiting...
09:50:02 (195951): wrapper (7.17.26016): starting
09:50:02 (195951): wrapper (7.17.26016): starting
09:50:02 (195951): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:41:54 (2469): wrapper (7.17.26016): starting
18:41:54 (2469): wrapper (7.17.26016): starting
18:41:54 (2469): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (21963): wrapper (7.17.26016): starting
21:00:02 (21963): wrapper (7.17.26016): starting
21:00:02 (21963): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:06 (21963): cmdock exited; CPU time 3.268035
21:00:06 (21963): called boinc_finish(0)

</stderr_txt>
]]>


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