Task 97922495

Name ebola_RdRp_v1_sidock_00252274_r1_s-24.0_0
Workunit 68551109
Created 11 Dec 2025, 22:11:18 UTC
Sent 14 Dec 2025, 18:44:17 UTC
Report deadline 18 Dec 2025, 18:44:17 UTC
Received 16 Dec 2025, 11:28:25 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 81755
Run time 17 hours 7 min 19 sec
CPU time 16 hours 50 min 45 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 1.00 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.60 MB
Peak swap size 247.51 MB
Peak disk usage 20.34 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
19:44:22 (1986884): wrapper (7.17.26016): starting
19:44:22 (1986884): wrapper (7.17.26016): starting
19:44:22 (1986884): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:23:43 (2897439): wrapper (7.17.26016): starting
12:23:43 (2897439): wrapper (7.17.26016): starting
12:23:43 (2897439): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55757583ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7fddb98a7df0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7fddb990b262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55757585c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55757587b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7fddb98a7df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7fddb99029ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7fddb98f7668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7fddb9943f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7fddb994f393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7fddb9978373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x557575851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55757581e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7fddb9891ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7fddb9891d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55757581aa3a]

Exiting...
19:14:33 (1261): wrapper (7.17.26016): starting
19:14:33 (1261): wrapper (7.17.26016): starting
19:14:33 (1261): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55e9d183ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7fa847a5bdf0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7fa847abf262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55e9d185c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55e9d187b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7fa847a5bdf0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7fa847ab69ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7fa847aab668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7fa847af7f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7fa847b03393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7fa847b2c373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55e9d1851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55e9d181e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7fa847a45ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7fa847a45d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55e9d181aa3a]

Exiting...
20:10:35 (1267): wrapper (7.17.26016): starting
20:10:35 (1267): wrapper (7.17.26016): starting
20:10:35 (1267): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x558742c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f4a8c3fcdf0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7f4a8c460262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x558742c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x558742c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f4a8c3fcdf0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7f4a8c4579ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7f4a8c44c668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7f4a8c498f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7f4a8c4a4393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7f4a8c4cd373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x558742c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x558742c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f4a8c3e6ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7f4a8c3e6d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x558742c1aa3a]

Exiting...
20:48:43 (1425): wrapper (7.17.26016): starting
20:48:43 (1425): wrapper (7.17.26016): starting
20:48:43 (1425): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:41:06 (105979): wrapper (7.17.26016): starting
22:41:06 (105979): wrapper (7.17.26016): starting
22:41:06 (105979): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55e5b5c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f3e5aca8df0]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x22) [0x7f3e5ad0c262]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55e5b5c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55e5b5c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7f3e5aca8df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7f3e5ad039ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7f3e5acf8668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7f3e5ad44f7a]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7f3e5ad50393]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7f3e5ad79373]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55e5b5c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55e5b5c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f3e5ac92ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7f3e5ac92d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55e5b5c1aa3a]

Exiting...
12:27:43 (1294): wrapper (7.17.26016): starting
12:27:43 (1294): wrapper (7.17.26016): starting
12:27:43 (1294): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:28:03 (1294): cmdock exited; CPU time 18.224366
12:28:03 (1294): called boinc_finish(0)

</stderr_txt>
]]>


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