Task 97226137

Name ebola_RdRp_v1_sidock_00095318_r3_s-24.0_0
Workunit 67923287
Created 9 Nov 2025, 16:52:27 UTC
Sent 11 Nov 2025, 17:44:57 UTC
Report deadline 15 Nov 2025, 17:44:57 UTC
Received 13 Nov 2025, 1:33:47 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 76998
Run time 4 hours 25 min 10 sec
CPU time 4 hours 24 min 51 sec
Validate state Valid
Credit 498.02
Device peak FLOPS 11.14 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.46 MB
Peak swap size 247.11 MB
Peak disk usage 20.05 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:40:22 (36163): wrapper (7.17.26016): starting
18:40:22 (36163): wrapper (7.17.26016): starting
18:40:22 (36163): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/nbfields/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5638dba3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x458d0) [0x7e3eb9c458d0]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c) [0x7e3eb9ca49bc]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e) [0x7e3eb9c4579e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x2c) [0x7e3eb9c288cd]
/lib/x86_64-linux-gnu/libc.so.6(+0x29909) [0x7e3eb9c29909]
/lib/x86_64-linux-gnu/libc.so.6(+0xaef65) [0x7e3eb9caef65]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x174) [0x7e3eb9cb4224]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5638dba5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5638dba7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x458d0) [0x7e3eb9c458d0]
/lib/x86_64-linux-gnu/libc.so.6(+0xaafe2) [0x7e3eb9caafe2]
/lib/x86_64-linux-gnu/libc.so.6(+0x9eae3) [0x7e3eb9c9eae3]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x32) [0x7e3eb9cf4932]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17) [0x7e3eb9d02657]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4a) [0x7e3eb9d336ba]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5638dba51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5638dba1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a578) [0x7e3eb9c2a578]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b) [0x7e3eb9c2a63b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5638dba1aa3a]

Exiting...
17:28:09 (10094): wrapper (7.17.26016): starting
17:28:09 (10094): wrapper (7.17.26016): starting
17:28:09 (10094): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/nbfields/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:33:35 (10094): cmdock exited; CPU time 11066.074975
20:33:35 (10094): called boinc_finish(0)

</stderr_txt>
]]>


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