Task 97187456

Name ebola_RdRp_v1_sidock_00085670_r3_s-24.0_0
Workunit 67884695
Created 9 Nov 2025, 16:19:58 UTC
Sent 10 Nov 2025, 10:23:46 UTC
Report deadline 14 Nov 2025, 10:23:46 UTC
Received 11 Nov 2025, 18:19:20 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 40324
Run time 13 hours 35 min 28 sec
CPU time 13 hours 32 min
Validate state Valid
Credit 561.98
Device peak FLOPS 5.51 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.12 MB
Peak swap size 246.54 MB
Peak disk usage 20.12 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
13:24:54 (5387): wrapper (7.17.26016): starting
13:24:54 (5387): wrapper (7.17.26016): starting
13:24:54 (5387): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55fd6f03ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fefabda5420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7fefabc396f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55fd6f05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55fd6f07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fefabbe2090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fefabc7c23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fefabc81ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fefabcb4a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55fd6f051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55fd6f01e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fefabbc3083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55fd6f01aa3a]

Exiting...
11:56:07 (1911): wrapper (7.17.26016): starting
11:56:07 (1911): wrapper (7.17.26016): starting
11:56:07 (1911): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55acf623ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fbea6c06420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7fbea6a9a6f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55acf625c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55acf627b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fbea6a43090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fbea6add23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fbea6ae2ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fbea6b15a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55acf6251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55acf621e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fbea6a24083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55acf621aa3a]

Exiting...
16:11:39 (1902): wrapper (7.17.26016): starting
16:11:39 (1902): wrapper (7.17.26016): starting
16:11:39 (1902): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:19:04 (1902): cmdock exited; CPU time 13775.323595
21:19:04 (1902): called boinc_finish(0)

</stderr_txt>
]]>


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