Task 97164430

Name ebola_RdRp_v1_sidock_00057567_r2_s-24.0_1
Workunit 67772282
Created 9 Nov 2025, 12:49:05 UTC
Sent 9 Nov 2025, 16:25:36 UTC
Report deadline 13 Nov 2025, 16:25:36 UTC
Received 11 Nov 2025, 4:15:00 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 78592
Run time 11 hours 31 min 31 sec
CPU time 11 hours 31 min 21 sec
Validate state Valid
Credit 354.40
Device peak FLOPS 7.88 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.10 MB
Peak swap size 247.70 MB
Peak disk usage 19.95 MB

Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
00:22:09 (648793): wrapper (7.17.26016): starting
00:22:09 (648793): wrapper (7.17.26016): starting
00:22:09 (648793): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5cda3da3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x79d241a45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x79d241aadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5cda3da5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5cda3da7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x79d241a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x79d241aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x79d241af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x79d241b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5cda3da51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5cda3da1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x79d241a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x79d241a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5cda3da1aa3a]

Exiting...
07:13:13 (2395): wrapper (7.17.26016): starting
07:13:13 (2395): wrapper (7.17.26016): starting
07:13:13 (2395): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:25:02 (20468): wrapper (7.17.26016): starting
09:25:02 (20468): wrapper (7.17.26016): starting
09:25:02 (20468): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (110597): wrapper (7.17.26016): starting
21:00:02 (110597): wrapper (7.17.26016): starting
21:00:02 (110597): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:14:47 (110597): cmdock exited; CPU time 4484.170275
22:14:47 (110597): called boinc_finish(0)

</stderr_txt>
]]>


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