Task 97158547

Name ebola_RdRp_v1_sidock_00043470_r3_s-24.0_1
Workunit 67715895
Created 7 Nov 2025, 0:40:09 UTC
Sent 9 Nov 2025, 12:22:44 UTC
Report deadline 13 Nov 2025, 12:22:44 UTC
Received 11 Nov 2025, 4:28:39 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 71987
Run time 1 days 12 hours 54 min 24 sec
CPU time 1 days 12 hours 38 min 18 sec
Validate state Valid
Credit 554.74
Device peak FLOPS 2.91 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 236.75 MB
Peak swap size 246.85 MB
Peak disk usage 20.14 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
21:33:17 (16080): wrapper (7.17.26016): starting
21:33:18 (16080): wrapper (7.17.26016): starting
21:33:18 (16080): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/56/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62fa96e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x798536442520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7985364a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62fa96e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62fa96e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x798536442520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7985364e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7985364ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x79853651bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62fa96e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62fa96e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x798536429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x798536429e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62fa96e1aa3a]

Exiting...
13:51:21 (4034): wrapper (7.17.26016): starting
13:51:22 (4034): wrapper (7.17.26016): starting
13:51:22 (4034): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/56/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:28:23 (4034): cmdock exited; CPU time 80635.087782
12:28:23 (4034): called boinc_finish(0)

</stderr_txt>
]]>


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