Task 97157304

Name	ebola_RdRp_v1_sidock_00042008_r2_s-24.0_1
Workunit	67710046
Created	6 Nov 2025, 12:07:13 UTC
Sent	9 Nov 2025, 11:32:10 UTC
Report deadline	13 Nov 2025, 11:32:10 UTC
Received	10 Nov 2025, 7:57:15 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54588
Run time	9 hours 17 min 41 sec
CPU time	9 hours 16 min 37 sec
Validate state	Valid
Credit	558.67
Device peak FLOPS	9.64 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	241.67 MB
Peak swap size	248.68 MB
Peak disk usage	20.20 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
06:24:08 (372008): wrapper (7.17.26016): starting
06:24:08 (372008): wrapper (7.17.26016): starting
06:24:08 (372008): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62e34603ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f11d6a45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f11d6a9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f11d6a4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f11d6a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7f11d6a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7f11d6aa8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7f11d6aab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7f11d6aaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62e34605c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62e34607b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f11d6a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f11d6aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f11d6af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f11d6b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62e346051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62e34601e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f11d6a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f11d6a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62e34601aa3a]

Exiting...
10:18:01 (402077): wrapper (7.17.26016): starting
10:18:01 (402077): wrapper (7.17.26016): starting
10:18:01 (402077): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58cebee3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72c8ac045330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72c8ac09eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72c8ac04527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x72c8ac0288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x72c8ac0297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x72c8ac0a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x72c8ac0ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x72c8ac0addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58cebee5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58cebee7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72c8ac045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72c8ac0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72c8ac0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72c8ac12975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58cebee51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58cebee1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72c8ac02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72c8ac02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58cebee1aa3a]

Exiting...
21:00:34 (482740): wrapper (7.17.26016): starting
21:00:35 (482740): wrapper (7.17.26016): starting
21:00:35 (482740): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:57:02 (482740): cmdock exited; CPU time 17772.292951
01:57:02 (482740): called boinc_finish(0)

</stderr_txt>
]]>