Task 97156658

Name ebola_RdRp_v1_sidock_00079984_r2_s-24.0_0
Workunit 67861950
Created 6 Nov 2025, 3:38:52 UTC
Sent 9 Nov 2025, 11:03:52 UTC
Report deadline 13 Nov 2025, 11:03:52 UTC
Received 10 Nov 2025, 3:00:28 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 31429
Run time 10 hours 53 min 14 sec
CPU time 10 hours 53 min 4 sec
Validate state Valid
Credit 501.14
Device peak FLOPS 6.08 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.25 MB
Peak swap size 247.18 MB
Peak disk usage 20.11 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
11:01:55 (2690636): wrapper (7.17.26016): starting
11:01:56 (2690636): wrapper (7.17.26016): starting
11:01:56 (2690636): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5e6b30c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7207d2c45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7207d2cadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5e6b30c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5e6b30c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7207d2c45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7207d2cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7207d2cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7207d2d2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5e6b30c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5e6b30c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7207d2c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7207d2c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5e6b30c1aa3a]

Exiting...
20:47:02 (3602): wrapper (7.17.26016): starting
20:47:02 (3602): wrapper (7.17.26016): starting
20:47:02 (3602): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:00:13 (3602): cmdock exited; CPU time 4306.845577
22:00:13 (3602): called boinc_finish(0)

</stderr_txt>
]]>


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