Task 97132158

Name ebola_RdRp_v1_sidock_00073867_r4_s-24.0_0
Workunit 67837484
Created 6 Nov 2025, 3:18:33 UTC
Sent 8 Nov 2025, 12:33:46 UTC
Report deadline 12 Nov 2025, 12:33:46 UTC
Received 9 Nov 2025, 16:47:22 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 60430
Run time 8 hours 6 min 43 sec
CPU time 8 hours 6 min 6 sec
Validate state Valid
Credit 470.60
Device peak FLOPS 9.26 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.60 MB
Peak swap size 247.93 MB
Peak disk usage 20.12 MB

Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
10:37:25 (42366): wrapper (7.17.26016): starting
10:37:26 (42366): wrapper (7.17.26016): starting
10:37:26 (42366): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c711023ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x711130245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x71113029eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x71113024527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7111302288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7111302297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7111302a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7111302ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7111302addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c711025c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c711027b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x711130245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7111302ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7111302f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x71113032975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5c7110251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c711021e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x71113022a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x71113022a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c711021aa3a]

Exiting...
02:49:45 (159775): wrapper (7.17.26016): starting
02:49:45 (159775): wrapper (7.17.26016): starting
02:49:45 (159775): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:45:03 (210339): wrapper (7.17.26016): starting
09:45:03 (210339): wrapper (7.17.26016): starting
09:45:03 (210339): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:47:08 (210339): cmdock exited; CPU time 3724.616250
10:47:08 (210339): called boinc_finish(0)

</stderr_txt>
]]>


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