Task 97130352

Name ebola_RdRp_v1_sidock_00073418_r4_s-24.0_0
Workunit 67835688
Created 6 Nov 2025, 3:16:31 UTC
Sent 8 Nov 2025, 10:41:51 UTC
Report deadline 12 Nov 2025, 10:41:51 UTC
Received 9 Nov 2025, 6:16:52 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 60430
Run time 8 hours 2 min 16 sec
CPU time 8 hours 1 min 13 sec
Validate state Valid
Credit 459.65
Device peak FLOPS 9.26 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.97 MB
Peak swap size 246.01 MB
Peak disk usage 20.06 MB

Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
05:14:22 (2532): wrapper (7.17.26016): starting
05:14:22 (2532): wrapper (7.17.26016): starting
05:14:22 (2532): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56a0bea3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x715b39c45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x715b39c9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x715b39c4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x715b39c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x715b39c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x715b39ca8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x715b39cab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x715b39caddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56a0bea5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56a0bea7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x715b39c45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x715b39cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x715b39cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x715b39d2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56a0bea51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56a0bea1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x715b39c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x715b39c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56a0bea1aa3a]

Exiting...
10:10:03 (39109): wrapper (7.17.26016): starting
10:10:03 (39109): wrapper (7.17.26016): starting
10:10:03 (39109): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (117307): wrapper (7.17.26016): starting
21:00:02 (117307): wrapper (7.17.26016): starting
21:00:02 (117307): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:16:41 (117307): cmdock exited; CPU time 11794.805446
00:16:41 (117307): called boinc_finish(0)

</stderr_txt>
]]>


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