Task 97123196

Name ebola_RdRp_v1_sidock_00071631_r3_s-24.0_0
Workunit 67828539
Created 6 Nov 2025, 3:10:10 UTC
Sent 8 Nov 2025, 4:34:54 UTC
Report deadline 12 Nov 2025, 4:34:54 UTC
Received 9 Nov 2025, 3:06:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 76200
Run time 7 hours 4 min 51 sec
CPU time 7 hours 4 min 38 sec
Validate state Valid
Credit 545.68
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.70 MB
Peak swap size 247.39 MB
Peak disk usage 20.01 MB

Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
00:33:00 (747668): wrapper (7.17.26016): starting
00:33:00 (747668): wrapper (7.17.26016): starting
00:33:00 (747668): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c9f2dc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e61b8845330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e61b889eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e61b884527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e61b88288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e61b88297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7e61b88a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7e61b88ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e61b88addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c9f2dc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c9f2dc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e61b8845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e61b88ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e61b88f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7e61b892975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5c9f2dc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c9f2dc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e61b882a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e61b882a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c9f2dc1aa3a]

Exiting...
04:25:08 (779400): wrapper (7.17.26016): starting
04:25:08 (779400): wrapper (7.17.26016): starting
04:25:08 (779400): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:12:25 (841782): wrapper (7.17.26016): starting
12:12:25 (841782): wrapper (7.17.26016): starting
12:12:25 (841782): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (910660): wrapper (7.17.26016): starting
21:00:02 (910660): wrapper (7.17.26016): starting
21:00:02 (910660): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:06:34 (910660): cmdock exited; CPU time 391.627488
21:06:34 (910660): called boinc_finish(0)

</stderr_txt>
]]>


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