Task 97123131

Name ebola_RdRp_v1_sidock_00071615_r1_s-24.0_0
Workunit 67828473
Created 6 Nov 2025, 3:10:08 UTC
Sent 8 Nov 2025, 4:32:12 UTC
Report deadline 12 Nov 2025, 4:32:12 UTC
Received 9 Nov 2025, 3:20:24 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 76200
Run time 7 hours 16 min 5 sec
CPU time 7 hours 15 min 47 sec
Validate state Valid
Credit 564.30
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.80 MB
Peak swap size 247.71 MB
Peak disk usage 20.02 MB

Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
00:30:22 (747335): wrapper (7.17.26016): starting
00:30:22 (747335): wrapper (7.17.26016): starting
00:30:22 (747335): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/28/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63e00663ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7af018e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7af018e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7af018e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7af018e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7af018e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7af018ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7af018eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7af018eaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63e00665c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63e00667b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7af018e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7af018eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7af018ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7af018f2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63e006651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63e00661e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7af018e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7af018e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63e00661aa3a]

Exiting...
04:23:06 (779156): wrapper (7.17.26016): starting
04:23:06 (779156): wrapper (7.17.26016): starting
04:23:06 (779156): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/28/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:09:13 (841383): wrapper (7.17.26016): starting
12:09:13 (841383): wrapper (7.17.26016): starting
12:09:13 (841383): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/28/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (910658): wrapper (7.17.26016): starting
21:00:02 (910658): wrapper (7.17.26016): starting
21:00:02 (910658): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/28/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:20:10 (910658): cmdock exited; CPU time 1206.964329
21:20:10 (910658): called boinc_finish(0)

</stderr_txt>
]]>


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