Task 97116496

Name	ebola_RdRp_v1_sidock_00069953_r4_s-24.0_0
Workunit	67821828
Created	6 Nov 2025, 3:04:38 UTC
Sent	7 Nov 2025, 22:21:24 UTC
Report deadline	11 Nov 2025, 22:21:24 UTC
Received	11 Nov 2025, 17:36:21 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54533
Run time	1 days 5 hours 53 min 9 sec
CPU time	1 days 5 hours 41 min 42 sec
Validate state	Valid
Credit	904.66
Device peak FLOPS	5.46 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	241.13 MB
Peak swap size	247.61 MB
Peak disk usage	20.24 MB
Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:00:00 (162219): wrapper (7.17.26016): starting
06:00:00 (162219): wrapper (7.17.26016): starting
06:00:00 (162219): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x555bdc43ff8c]
/lib64/libc.so.6(+0x3ebf0)[0x7fcbd463ebf0]
/lib64/libc.so.6(+0x8bedc)[0x7fcbd468bedc]
/lib64/libc.so.6(raise+0x16)[0x7fcbd463eb46]
/lib64/libc.so.6(abort+0xd3)[0x7fcbd4628833]
/lib64/libc.so.6(+0x29172)[0x7fcbd4629172]
/lib64/libc.so.6(+0x95f87)[0x7fcbd4695f87]
/lib64/libc.so.6(+0x9783c)[0x7fcbd469783c]
/lib64/libc.so.6(free+0x55)[0x7fcbd469a2c5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x555bdc45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x555bdc47b8e4]
/lib64/libc.so.6(+0x3ebf0)[0x7fcbd463ebf0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fcbd46d4655]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fcbd46d9107]
/lib64/libc.so.6(usleep+0x49)[0x7fcbd4704fe9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x555bdc451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x555bdc41e784]
/lib64/libc.so.6(+0x295d0)[0x7fcbd46295d0]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fcbd4629680]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x555bdc41aa3a]

Exiting...
12:41:38 (4489): wrapper (7.17.26016): starting
12:41:38 (4489): wrapper (7.17.26016): starting
12:41:38 (4489): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:00:00 (11445): wrapper (7.17.26016): starting
06:00:00 (11445): wrapper (7.17.26016): starting
06:00:00 (11445): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a85a83ff8c]
/lib64/libc.so.6(+0x3ebf0)[0x7f55e063ebf0]
/lib64/libc.so.6(+0x8bedc)[0x7f55e068bedc]
/lib64/libc.so.6(raise+0x16)[0x7f55e063eb46]
/lib64/libc.so.6(abort+0xd3)[0x7f55e0628833]
/lib64/libc.so.6(+0x29172)[0x7f55e0629172]
/lib64/libc.so.6(+0x95f87)[0x7f55e0695f87]
/lib64/libc.so.6(+0x9783c)[0x7f55e069783c]
/lib64/libc.so.6(free+0x55)[0x7f55e069a2c5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a85a85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a85a87b8e4]
/lib64/libc.so.6(+0x3ebf0)[0x7f55e063ebf0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f55e06d4655]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f55e06d9107]
/lib64/libc.so.6(usleep+0x49)[0x7f55e0704fe9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a85a851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a85a81e784]
/lib64/libc.so.6(+0x295d0)[0x7f55e06295d0]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f55e0629680]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a85a81aa3a]

Exiting...
09:43:04 (4493): wrapper (7.17.26016): starting
09:43:04 (4493): wrapper (7.17.26016): starting
09:43:04 (4493): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:03:40 (28108): wrapper (7.17.26016): starting
14:03:40 (28108): wrapper (7.17.26016): starting
14:03:40 (28108): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:59:51 (31202): wrapper (7.17.26016): starting
14:59:52 (31202): wrapper (7.17.26016): starting
14:59:52 (31202): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:00:00 (14075): wrapper (7.17.26016): starting
06:00:00 (14075): wrapper (7.17.26016): starting
06:00:00 (14075): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e65c43ff8c]
/lib64/libc.so.6(+0x3ebf0)[0x7f765b23ebf0]
/lib64/libc.so.6(+0x8bedc)[0x7f765b28bedc]
/lib64/libc.so.6(raise+0x16)[0x7f765b23eb46]
/lib64/libc.so.6(abort+0xd3)[0x7f765b228833]
/lib64/libc.so.6(+0x29172)[0x7f765b229172]
/lib64/libc.so.6(+0x95f87)[0x7f765b295f87]
/lib64/libc.so.6(+0x9783c)[0x7f765b29783c]
/lib64/libc.so.6(free+0x55)[0x7f765b29a2c5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e65c45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e65c47b8e4]
/lib64/libc.so.6(+0x3ebf0)[0x7f765b23ebf0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f765b2d4655]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f765b2d9107]
/lib64/libc.so.6(usleep+0x49)[0x7f765b304fe9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e65c451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e65c41e784]
/lib64/libc.so.6(+0x295d0)[0x7f765b2295d0]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f765b229680]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e65c41aa3a]

Exiting...
10:40:15 (4754): wrapper (7.17.26016): starting
10:40:15 (4754): wrapper (7.17.26016): starting
10:40:15 (4754): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:00:00 (22148): wrapper (7.17.26016): starting
06:00:00 (22148): wrapper (7.17.26016): starting
06:00:00 (22148): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:30:24 (470756): wrapper (7.17.26016): starting
09:30:24 (470756): wrapper (7.17.26016): starting
09:30:24 (470756): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a258e3ff8c]
/lib64/libc.so.6(+0x3fc30)[0x7f196303fc30]
/lib64/libc.so.6(+0x8d02c)[0x7f196308d02c]
/lib64/libc.so.6(raise+0x16)[0x7f196303fb86]
/lib64/libc.so.6(abort+0xd3)[0x7f1963029873]
/lib64/libc.so.6(+0x2a1b2)[0x7f196302a1b2]
/lib64/libc.so.6(+0x970d7)[0x7f19630970d7]
/lib64/libc.so.6(+0x9898c)[0x7f196309898c]
/lib64/libc.so.6(free+0x55)[0x7f196309b415]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a258e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a258e7b8e4]
/lib64/libc.so.6(+0x3fc30)[0x7f196303fc30]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f19630d5795]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f19630da387]
/lib64/libc.so.6(usleep+0x49)[0x7f1963106319]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a258e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a258e1e784]
/lib64/libc.so.6(+0x2a610)[0x7f196302a610]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f196302a6c0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a258e1aa3a]

Exiting...
11:31:56 (10692): wrapper (7.17.26016): starting
11:31:56 (10692): wrapper (7.17.26016): starting
11:31:56 (10692): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:36:06 (10692): cmdock exited; CPU time 3246.640090
12:36:06 (10692): called boinc_finish(0)

</stderr_txt>
]]>