Task 97059903

Name ebola_RdRp_v1_sidock_00057580_r2_s-24.0_0
Workunit 67772334
Created 2 Nov 2025, 11:38:23 UTC
Sent 6 Nov 2025, 6:13:43 UTC
Report deadline 9 Nov 2025, 12:56:45 UTC
Received 7 Nov 2025, 10:39:43 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 77533
Run time 12 hours 27 min 25 sec
CPU time 12 hours 8 min 56 sec
Validate state Valid
Credit 575.38
Device peak FLOPS 7.92 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.23 MB
Peak swap size 247.69 MB
Peak disk usage 19.98 MB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
17:00:55 (1108496): wrapper (7.17.26016): starting
17:00:55 (1108496): wrapper (7.17.26016): starting
17:00:55 (1108496): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55b2c863ff8c]
/usr/lib/libc.so.6(+0x3e540) [0x7f2d3de3e540]
/usr/lib/libc.so.6(+0x9894c) [0x7f2d3de9894c]
/usr/lib/libc.so.6(gsignal+0x20) [0x7f2d3de3e410]
/usr/lib/libc.so.6(abort+0x26) [0x7f2d3de2557a]
/usr/lib/libc.so.6(+0x26613) [0x7f2d3de26613]
/usr/lib/libc.so.6(+0xa2d65) [0x7f2d3dea2d65]
/usr/lib/libc.so.6(+0xa2d84) [0x7f2d3dea2d84]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55b2c865c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55b2c867b8e4]
/usr/lib/libc.so.6(+0x3e540) [0x7f2d3de3e540]
/usr/lib/libc.so.6(+0x9f042) [0x7f2d3de9f042]
/usr/lib/libc.so.6(+0x931ac) [0x7f2d3de931ac]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x7f2d3dee3c12]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f2d3deefc97]
/usr/lib/libc.so.6(usleep+0x4a) [0x7f2d3df1a57a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55b2c8651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55b2c861e784]
/usr/lib/libc.so.6(+0x27675) [0x7f2d3de27675]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x7f2d3de27729]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55b2c861aa3a]

Exiting...
10:28:11 (5707): wrapper (7.17.26016): starting
10:28:11 (5707): wrapper (7.17.26016): starting
10:28:11 (5707): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:39:29 (5707): cmdock exited; CPU time 25740.332315
19:39:29 (5707): called boinc_finish(0)

</stderr_txt>
]]>


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