Task 97017970

Name ebola_RdRp_v1_sidock_00047107_r2_s-24.0_0
Workunit 67730442
Created 2 Nov 2025, 11:03:44 UTC
Sent 3 Nov 2025, 18:08:09 UTC
Report deadline 7 Nov 2025, 18:08:09 UTC
Received 6 Nov 2025, 1:54:20 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 79293
Run time 14 hours 25 min 26 sec
CPU time 13 hours 48 min 44 sec
Validate state Valid
Credit 799.22
Device peak FLOPS 7.09 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.63 MB
Peak swap size 246.89 MB
Peak disk usage 20.28 MB

Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
10:26:03 (27277): wrapper (7.17.26016): starting
10:26:03 (27277): wrapper (7.17.26016): starting
10:26:03 (27277): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b12223ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f19592ed050]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7f1959349efa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b12225c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b12227b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f19592ed050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f1959380545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f1959384e53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f19593b0285]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b122251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b12221e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f19592d824a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f19592d8305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b12221aa3a]

Exiting...
07:21:40 (2947): wrapper (7.17.26016): starting
07:21:40 (2947): wrapper (7.17.26016): starting
07:21:40 (2947): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:28:05 (14284): wrapper (7.17.26016): starting
13:28:05 (14284): wrapper (7.17.26016): starting
13:28:05 (14284): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:54:10 (14284): cmdock exited; CPU time 15453.252929
17:54:10 (14284): called boinc_finish(0)

</stderr_txt>
]]>


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