Task 96957320

Name	ebola_RdRp_v1_sidock_00034041_r4_s-24.0_0
Workunit	67678180
Created	29 Oct 2025, 10:18:49 UTC
Sent	1 Nov 2025, 4:12:06 UTC
Report deadline	5 Nov 2025, 4:12:06 UTC
Received	6 Nov 2025, 4:52:43 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	51286
Run time	12 hours 2 min 58 sec
CPU time	11 hours 48 min 29 sec
Validate state	Valid
Credit	444.48
Device peak FLOPS	4.08 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	238.73 MB
Peak swap size	246.89 MB
Peak disk usage	20.36 MB
Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
06:16:57 (4166628): wrapper (7.17.26016): starting
06:16:57 (4166628): wrapper (7.17.26016): starting
06:16:57 (4166628): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/20/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5962f583ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7c38b0842520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7c38b08969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7c38b0842476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7c38b08287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89677)[0x7c38b0889677]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7c38b08a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7c38b08a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7c38b08a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5962f585c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5962f587b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7c38b0842520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7c38b08e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7c38b08ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7c38b091bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5962f5851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5962f581e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7c38b0829d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7c38b0829e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5962f581aa3a]

Exiting...
20:00:01 (350685): wrapper (7.17.26016): starting
20:00:01 (350685): wrapper (7.17.26016): starting
20:00:01 (350685): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/20/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58c32763ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7c7b69042520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7c7b690a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58c32765c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58c32767b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7c7b69042520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7c7b690e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7c7b690ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7c7b6911bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58c327651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58c32761e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7c7b69029d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7c7b69029e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58c32761aa3a]

Exiting...
20:00:00 (241399): wrapper (7.17.26016): starting
20:00:01 (241399): wrapper (7.17.26016): starting
20:00:01 (241399): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/20/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57a65d43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x711f46242520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x711f462969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x711f46242476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x711f462287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89677)[0x711f46289677]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x711f462a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x711f462a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x711f462a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57a65d45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57a65d47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x711f46242520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x711f462e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x711f462ea677]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x711f462ea5ae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x57a65d451a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57a65d41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x711f46229d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x711f46229e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57a65d41aa3a]

Exiting...
20:00:00 (1895554): wrapper (7.17.26016): starting
20:00:01 (1895554): wrapper (7.17.26016): starting
20:00:01 (1895554): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/20/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x602bd343ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f14f2642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f14f26a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x602bd345c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x602bd347b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f14f2642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f14f26e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f14f26ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f14f271bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x602bd3451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x602bd341e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f14f2629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f14f2629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x602bd341aa3a]

Exiting...
20:00:00 (1663943): wrapper (7.17.26016): starting
20:00:00 (1663943): wrapper (7.17.26016): starting
20:00:00 (1663943): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/20/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:52:25 (1663943): cmdock exited; CPU time 10239.774110
23:52:25 (1663943): called boinc_finish(0)

</stderr_txt>
]]>