Task 96197959

Name corona_Sprot_delta_v1_RM_sidock_01857220_r4_s1000.0_0
Workunit 66973092
Created 16 Mar 2025, 15:07:53 UTC
Sent 16 Mar 2025, 18:45:11 UTC
Report deadline 19 Mar 2025, 18:45:11 UTC
Received 17 Mar 2025, 12:26:30 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 69854
Run time 3 hours 8 min 13 sec
CPU time 2 hours 48 min 47 sec
Validate state Valid
Credit 91.85
Device peak FLOPS 2.96 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 135.47 MB
Peak swap size 228.31 MB
Peak disk usage 23.62 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:45:17 (6297): wrapper (7.17.26016): starting
19:45:17 (6297): wrapper (7.17.26016): starting
19:45:17 (6297): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55bf37c3ff8c]
/lib64/libc.so.6(+0x1a050) [0x7fc91aa3a050]
/lib64/libc.so.6(+0x73114) [0x7fc91aa93114]
/lib64/libc.so.6(gsignal+0x1e) [0x7fc91aa39f9e]
/lib64/libc.so.6(abort+0xdf) [0x7fc91aa21942]
/lib64/libc.so.6(+0x27a7) [0x7fc91aa227a7]
/lib64/libc.so.6(+0x7d2a5) [0x7fc91aa9d2a5]
/lib64/libc.so.6(+0x7f6dc) [0x7fc91aa9f6dc]
/lib64/libc.so.6(__libc_free+0x7e) [0x7fc91aaa200e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55bf37c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55bf37c7b8e4]
/lib64/libc.so.6(+0x1a050) [0x7fc91aa3a050]
/lib64/libc.so.6(clock_nanosleep+0x63) [0x7fc91aadd713]
/lib64/libc.so.6(nanosleep+0x17) [0x7fc91aae9807]
/lib64/libc.so.6(usleep+0x4a) [0x7fc91ab14c5a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55bf37c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55bf37c1e784]
/lib64/libc.so.6(+0x3248) [0x7fc91aa23248]
/lib64/libc.so.6(__libc_start_main+0x8b) [0x7fc91aa2330b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55bf37c1aa3a]

Exiting...
08:16:58 (1733): wrapper (7.17.26016): starting
08:16:59 (1733): wrapper (7.17.26016): starting
08:16:59 (1733): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:32:30 (1733): cmdock exited; CPU time 8543.449410
11:32:30 (1733): called boinc_finish(0)

</stderr_txt>
]]>


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