Task 95795387

Name	corona_Sprot_delta_v1_RM_sidock_01764906_r1_s1000.0_0
Workunit	66603833
Created	11 Mar 2025, 21:59:22 UTC
Sent	12 Mar 2025, 6:47:47 UTC
Report deadline	15 Mar 2025, 6:47:47 UTC
Received	13 Mar 2025, 4:50:14 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54583
Run time	1 hours 30 min 45 sec
CPU time	1 hours 30 min 37 sec
Validate state	Valid
Credit	83.53
Device peak FLOPS	8.13 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	135.86 MB
Peak swap size	142.25 MB
Peak disk usage	23.66 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
03:40:49 (37658): wrapper (7.17.26016): starting
03:40:49 (37658): wrapper (7.17.26016): starting
03:40:49 (37658): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f368583ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ec7af242520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7ec7af2969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7ec7af242476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7ec7af2287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89677)[0x7ec7af289677]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7ec7af2a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7ec7af2a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7ec7af2a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f368585c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f368587b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ec7af242520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7ec7af2e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7ec7af2ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7ec7af31bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f3685851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f368581e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7ec7af229d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7ec7af229e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f368581aa3a]

Exiting...
21:09:04 (60955): wrapper (7.17.26016): starting
21:09:04 (60955): wrapper (7.17.26016): starting
21:09:04 (60955): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:18:45 (1349): wrapper (7.17.26016): starting
21:18:45 (1349): wrapper (7.17.26016): starting
21:18:45 (1349): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5bec7063ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x770c9fe42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x770c9fea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5bec7065c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5bec7067b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x770c9fe42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x770c9fee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x770c9feea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x770c9ff1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5bec70651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5bec7061e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x770c9fe29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x770c9fe29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5bec7061aa3a]

Exiting...
23:22:36 (1461): wrapper (7.17.26016): starting
23:22:36 (1461): wrapper (7.17.26016): starting
23:22:36 (1461): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:50:00 (1461): cmdock exited; CPU time 1642.704449
23:50:00 (1461): called boinc_finish(0)

</stderr_txt>
]]>