Task 91295870

Name corona_Sprot_delta_v1_RM_sidock_00711909_r3_s1000.0_0
Workunit 62391774
Created 20 Dec 2024, 20:57:30 UTC
Sent 22 Dec 2024, 16:26:29 UTC
Report deadline 27 Dec 2024, 16:26:29 UTC
Received 23 Dec 2024, 0:47:48 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 60491
Run time 2 hours 17 min 17 sec
CPU time 2 hours 16 min 40 sec
Validate state Valid
Credit 65.68
Device peak FLOPS 0.00 GFLOPS
Application version CurieMarieDock 0.2.0 short tasks
Anonymous platform (CPU)
Peak working set size 134.68 MB
Peak swap size 137.55 MB
Peak disk usage 11.16 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
13:25:21 (108330): wrapper (7.21.26018): starting
13:25:21 (108330): wrapper (7.21.26018): starting
13:25:21 (108330): wrapper: running ../../projects/www.sidock.si_sidock/cmdock (-c -j 1 -b 1 -r target.prm -p "/opt/cmdock-0.2.0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper(+0x167a5) [0x55a1cef257a5]
/usr/lib64/libc.so.6(+0x3bd50) [0x7f93cbc58d50]
/usr/lib64/libc.so.6(__libc_free+0x1a) [0x7f93cbcb597a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper(+0x2e83e) [0x55a1cef3d83e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper(+0x4d500) [0x55a1cef5c500]
/usr/lib64/libc.so.6(+0x3bd50) [0x7f93cbc58d50]
/usr/lib64/libc.so.6(clock_nanosleep+0x6a) [0x7f93cbcec18a]
/usr/lib64/libc.so.6(nanosleep+0x17) [0x7f93cbcf6fc7]
/usr/lib64/libc.so.6(usleep+0x57) [0x7f93cbd1f377]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper(+0x24a2f) [0x55a1cef33a2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper(+0x8009) [0x55a1cef17009]
/usr/lib64/libc.so.6(+0x26480) [0x7f93cbc43480]
/usr/lib64/libc.so.6(__libc_start_main+0x89) [0x7f93cbc43539]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper(+0x8625) [0x55a1cef17625]

Exiting...
19:17:30 (127968): wrapper (7.21.26018): starting
19:17:30 (127968): wrapper (7.21.26018): starting
19:17:30 (127968): wrapper: running ../../projects/www.sidock.si_sidock/cmdock (-c -j 1 -b 1 -r target.prm -p "/opt/cmdock-0.2.0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:47:09 (127968): cmdock exited; CPU time 1772.083922
19:47:09 (127968): called boinc_finish(0)

</stderr_txt>
]]>


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