Task 84729896

Name ebola_GP_v1_sidock_00438916_r2_s-20.0_0
Workunit 55960931
Created 4 Oct 2024, 1:39:31 UTC
Sent 4 Oct 2024, 18:07:16 UTC
Report deadline 6 Oct 2024, 18:07:16 UTC
Received 4 Oct 2024, 20:48:43 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 19974
Run time 1 hours 20 min 27 sec
CPU time 1 hours 19 min 21 sec
Validate state Valid
Credit 57.31
Device peak FLOPS 8.56 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 97.87 MB
Peak swap size 104.45 MB
Peak disk usage 16.83 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
20:18:10 (51986): wrapper (7.17.26016): starting
20:18:10 (51986): wrapper (7.17.26016): starting
20:18:10 (51986): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55df37e3ff8c]
/usr/lib/libc.so.6(+0x3d1d0) [0x7fba300401d0]
/usr/lib/libc.so.6(__libc_free+0x25) [0x7fba300a8575]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55df37e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55df37e7b8e4]
/usr/lib/libc.so.6(+0x3d1d0) [0x7fba300401d0]
/usr/lib/libc.so.6(clock_nanosleep+0x63) [0x7fba300e4733]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7fba300f0827]
/usr/lib/libc.so.6(usleep+0x4a) [0x7fba3011bf9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55df37e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55df37e1e784]
/usr/lib/libc.so.6(+0x25e08) [0x7fba30028e08]
/usr/lib/libc.so.6(__libc_start_main+0x8c) [0x7fba30028ecc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55df37e1aa3a]

Exiting...
21:15:48 (7796): wrapper (7.17.26016): starting
21:15:48 (7796): wrapper (7.17.26016): starting
21:15:48 (7796): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:26:12 (7796): cmdock exited; CPU time 4000.323481
22:26:12 (7796): called boinc_finish(0)

</stderr_txt>
]]>


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