Task 84726426

Name	ebola_GP_v1_sidock_00438043_r3_s-20.0_0
Workunit	55957440
Created	4 Oct 2024, 1:36:24 UTC
Sent	4 Oct 2024, 17:20:21 UTC
Report deadline	6 Oct 2024, 17:20:21 UTC
Received	5 Oct 2024, 1:49:07 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 45 min 20 sec
CPU time	1 hours 42 min 48 sec
Validate state	Valid
Credit	67.33
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	98.16 MB
Peak swap size	104.23 MB
Peak disk usage	16.86 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:27 (9663): wrapper (7.17.26016): starting
19:20:27 (9663): wrapper (7.17.26016): starting
19:20:27 (9663): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5658): wrapper (7.17.26016): starting
22:09:45 (5658): wrapper (7.17.26016): starting
22:09:45 (5658): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558e95920f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f71dcea1420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f71dccde00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f71dccbd859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f71dcd2826e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f71dcd302fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f71dcd31b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558e9593d3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558e9595c8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f71dccde090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f71dcd7823f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f71dcd7dec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f71dcdb0a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558e95932adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558e958ff784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f71dccbf083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558e958fba3a]

Exiting...
22:13:30 (4558): wrapper (7.17.26016): starting
22:13:30 (4558): wrapper (7.17.26016): starting
22:13:30 (4558): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5883): wrapper (7.17.26016): starting
00:48:24 (5883): wrapper (7.17.26016): starting
00:48:24 (5883): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ffee66ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fce977c5420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fce9760200b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fce975e1859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fce9764c26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fce976542fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fce97655b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ffee68c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ffee6ab8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fce97602090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fce9769c23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fce976a1ec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7fce976a1dfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55ffee681a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ffee64e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fce975e3083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ffee64aa3a]

Exiting...
22:58:48 (5878): wrapper (7.17.26016): starting
22:58:48 (5878): wrapper (7.17.26016): starting
22:58:48 (5878): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:37:26 (440047): wrapper (7.17.26016): starting
01:37:27 (440047): wrapper (7.17.26016): starting
01:37:27 (440047): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/41/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:54:14 (440047): cmdock exited; CPU time 2485.045944
02:54:14 (440047): called boinc_finish(0)

</stderr_txt>
]]>