Task 84726423

Name	ebola_GP_v1_sidock_00438047_r2_s-20.0_0
Workunit	55957455
Created	4 Oct 2024, 1:36:24 UTC
Sent	4 Oct 2024, 17:20:21 UTC
Report deadline	6 Oct 2024, 17:20:21 UTC
Received	5 Oct 2024, 1:49:07 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 45 min 26 sec
CPU time	1 hours 43 min 11 sec
Validate state	Valid
Credit	67.75
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	98.01 MB
Peak swap size	104.05 MB
Peak disk usage	16.89 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:33 (9710): wrapper (7.17.26016): starting
19:20:33 (9710): wrapper (7.17.26016): starting
19:20:33 (9710): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/53/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5671): wrapper (7.17.26016): starting
22:09:45 (5671): wrapper (7.17.26016): starting
22:09:45 (5671): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/53/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55cd7d831f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f2e1bc32420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f2e1ba6f00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f2e1ba4e859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f2e1bab926e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f2e1bac12fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f2e1bac2b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55cd7d84e3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55cd7d86d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f2e1ba6f090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f2e1bb0923f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f2e1bb0eec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f2e1bb41a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55cd7d843adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55cd7d810784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f2e1ba50083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55cd7d80ca3a]

Exiting...
22:13:30 (4570): wrapper (7.17.26016): starting
22:13:30 (4570): wrapper (7.17.26016): starting
22:13:30 (4570): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/53/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5896): wrapper (7.17.26016): starting
00:48:24 (5896): wrapper (7.17.26016): starting
00:48:24 (5896): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/53/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (19 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55aa9f24bf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fd820a91420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fd8208ce00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fd8208ad859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fd82091826e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fd8209202fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fd820921b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55aa9f2683dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55aa9f2878e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fd8208ce090]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x55aa9f246ec0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fd820a91420]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fd82096823f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fd82096dec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7fd82096ddfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55aa9f25da9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55aa9f22a784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fd8208af083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55aa9f226a3a]

Exiting...
22:58:48 (5942): wrapper (7.17.26016): starting
22:58:48 (5942): wrapper (7.17.26016): starting
22:58:48 (5942): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/53/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:37:26 (440058): wrapper (7.17.26016): starting
01:37:27 (440058): wrapper (7.17.26016): starting
01:37:27 (440058): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/53/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:55:47 (440058): cmdock exited; CPU time 2559.555505
02:55:47 (440058): called boinc_finish(0)

</stderr_txt>
]]>