Task 84726416

Name	ebola_GP_v1_sidock_00438041_r1_s-20.0_0
Workunit	55957430
Created	4 Oct 2024, 1:36:24 UTC
Sent	4 Oct 2024, 17:20:22 UTC
Report deadline	6 Oct 2024, 17:20:22 UTC
Received	5 Oct 2024, 0:47:26 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 49 min 43 sec
CPU time	1 hours 47 min 55 sec
Validate state	Valid
Credit	70.06
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	98.04 MB
Peak swap size	104.19 MB
Peak disk usage	16.83 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:27 (9659): wrapper (7.17.26016): starting
19:20:27 (9659): wrapper (7.17.26016): starting
19:20:27 (9659): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/37/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5654): wrapper (7.17.26016): starting
22:09:45 (5654): wrapper (7.17.26016): starting
22:09:45 (5654): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/37/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558d98961f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7feedcc8a420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7feedcac700b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7feedcaa6859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7feedcb1126e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7feedcb192fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7feedcb1ab2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558d9897e3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558d9899d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7feedcac7090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7feedcb6123f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7feedcb66ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7feedcb99a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558d98973adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558d98940784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7feedcaa8083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558d9893ca3a]

Exiting...
22:13:30 (4554): wrapper (7.17.26016): starting
22:13:30 (4554): wrapper (7.17.26016): starting
22:13:30 (4554): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/37/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5879): wrapper (7.17.26016): starting
00:48:24 (5879): wrapper (7.17.26016): starting
00:48:24 (5879): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/37/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560b3e534f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fa35231e420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fa35215b00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fa35213a859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fa3521a526e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fa3521ad2fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fa3521aeb2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560b3e5513dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560b3e5708e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fa35215b090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fa3521f523f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fa3521faec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7fa3521fadfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x560b3e546a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560b3e513784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fa35213c083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560b3e50fa3a]

Exiting...
22:58:48 (5856): wrapper (7.17.26016): starting
22:58:48 (5856): wrapper (7.17.26016): starting
22:58:48 (5856): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/37/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:05:10 (438166): wrapper (7.17.26016): starting
01:05:10 (438166): wrapper (7.17.26016): starting
01:05:10 (438166): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/37/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:57:43 (438166): cmdock exited; CPU time 2678.942271
01:57:43 (438166): called boinc_finish(0)

</stderr_txt>
]]>