Task 84726411

Name	ebola_GP_v1_sidock_00438039_r3_s-20.0_0
Workunit	55957424
Created	4 Oct 2024, 1:36:24 UTC
Sent	4 Oct 2024, 17:20:21 UTC
Report deadline	6 Oct 2024, 17:20:21 UTC
Received	5 Oct 2024, 0:47:26 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 41 min 28 sec
CPU time	1 hours 39 min 24 sec
Validate state	Valid
Credit	64.34
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	97.79 MB
Peak swap size	104.18 MB
Peak disk usage	16.81 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:35 (9725): wrapper (7.17.26016): starting
19:20:36 (9725): wrapper (7.17.26016): starting
19:20:36 (9725): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/59/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5688): wrapper (7.17.26016): starting
22:09:45 (5688): wrapper (7.17.26016): starting
22:09:45 (5688): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/59/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557462e5af8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f92d9327420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f92d916400b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f92d9143859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f92d91ae26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f92d91b62fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f92d91b7b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557462e773dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557462e968e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f92d9164090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f92d91fe23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f92d9203ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f92d9236a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557462e6cadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557462e39784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f92d9145083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557462e35a3a]

Exiting...
22:13:30 (4576): wrapper (7.17.26016): starting
22:13:30 (4576): wrapper (7.17.26016): starting
22:13:30 (4576): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/59/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5916): wrapper (7.17.26016): starting
00:48:24 (5916): wrapper (7.17.26016): starting
00:48:24 (5916): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/59/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ca576c1f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7ff1349e7420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7ff13482400b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7ff134803859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7ff13486e26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7ff1348762fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7ff134877b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ca576de3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ca576fd8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7ff134824090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7ff1348be23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ff1348c3ec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7ff1348c3dfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55ca576d3a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ca576a0784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7ff134805083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ca5769ca3a]

Exiting...
22:58:48 (5974): wrapper (7.17.26016): starting
22:58:48 (5974): wrapper (7.17.26016): starting
22:58:48 (5974): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/59/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:37:26 (440064): wrapper (7.17.26016): starting
01:37:27 (440064): wrapper (7.17.26016): starting
01:37:27 (440064): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/59/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:46:55 (440064): cmdock exited; CPU time 2288.796438
02:46:55 (440064): called boinc_finish(0)

</stderr_txt>
]]>