Task 84726409

Name	ebola_GP_v1_sidock_00438043_r4_s-20.0_0
Workunit	55957441
Created	4 Oct 2024, 1:36:24 UTC
Sent	4 Oct 2024, 17:20:21 UTC
Report deadline	6 Oct 2024, 17:20:21 UTC
Received	5 Oct 2024, 1:49:07 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 44 min 18 sec
CPU time	1 hours 42 min 14 sec
Validate state	Valid
Credit	66.95
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	97.18 MB
Peak swap size	103.31 MB
Peak disk usage	16.83 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:27 (9662): wrapper (7.17.26016): starting
19:20:27 (9662): wrapper (7.17.26016): starting
19:20:27 (9662): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/40/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5657): wrapper (7.17.26016): starting
22:09:45 (5657): wrapper (7.17.26016): starting
22:09:45 (5657): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/40/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56348e5b2f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f26b8381420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f26b81be00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f26b819d859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f26b820826e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f26b82102fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f26b8211b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56348e5cf3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56348e5ee8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f26b81be090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f26b825823f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f26b825dec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f26b8290a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56348e5c4adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56348e591784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f26b819f083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56348e58da3a]

Exiting...
22:13:30 (4557): wrapper (7.17.26016): starting
22:13:30 (4557): wrapper (7.17.26016): starting
22:13:30 (4557): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/40/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5882): wrapper (7.17.26016): starting
00:48:24 (5882): wrapper (7.17.26016): starting
00:48:24 (5882): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/40/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x555a7509df8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f6640b38420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f664097500b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f6640954859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f66409bf26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f66409c72fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f66409c8b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x555a750ba3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x555a750d98e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f6640975090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f6640a0f23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f6640a14ec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7f6640a14dfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x555a750afa9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x555a7507c784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f6640956083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x555a75078a3a]

Exiting...
22:58:48 (5869): wrapper (7.17.26016): starting
22:58:48 (5869): wrapper (7.17.26016): starting
22:58:48 (5869): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/40/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:37:26 (440046): wrapper (7.17.26016): starting
01:37:27 (440046): wrapper (7.17.26016): starting
01:37:27 (440046): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/40/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:52:08 (440046): cmdock exited; CPU time 2456.635812
02:52:08 (440046): called boinc_finish(0)

</stderr_txt>
]]>