Task 84726405

Name	ebola_GP_v1_sidock_00438042_r2_s-20.0_0
Workunit	55957435
Created	4 Oct 2024, 1:36:24 UTC
Sent	4 Oct 2024, 17:20:21 UTC
Report deadline	6 Oct 2024, 17:20:21 UTC
Received	5 Oct 2024, 1:49:07 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 46 min 1 sec
CPU time	1 hours 43 min 42 sec
Validate state	Valid
Credit	68.08
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	98.04 MB
Peak swap size	104.25 MB
Peak disk usage	16.81 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:31 (9696): wrapper (7.17.26016): starting
19:20:31 (9696): wrapper (7.17.26016): starting
19:20:31 (9696): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5668): wrapper (7.17.26016): starting
22:09:45 (5668): wrapper (7.17.26016): starting
22:09:45 (5668): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55717de20f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7ff0f8247420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7ff0f808400b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7ff0f8063859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7ff0f80ce26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7ff0f80d62fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7ff0f80d7b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55717de3d3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55717de5c8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7ff0f8084090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7ff0f811e23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ff0f8123ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7ff0f8156a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55717de32adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55717ddff784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7ff0f8065083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55717ddfba3a]

Exiting...
22:13:30 (4568): wrapper (7.17.26016): starting
22:13:30 (4568): wrapper (7.17.26016): starting
22:13:30 (4568): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5894): wrapper (7.17.26016): starting
00:48:24 (5894): wrapper (7.17.26016): starting
00:48:24 (5894): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x562dd2443f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f6c6ae82420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f6c6acbf00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f6c6ac9e859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f6c6ad0926e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f6c6ad112fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f6c6ad12b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x562dd24603dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x562dd247f8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f6c6acbf090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f6c6ad5923f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f6c6ad5eec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7f6c6ad5edfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x562dd2455a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x562dd2422784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f6c6aca0083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x562dd241ea3a]

Exiting...
22:58:48 (5925): wrapper (7.17.26016): starting
22:58:48 (5925): wrapper (7.17.26016): starting
22:58:48 (5925): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:37:26 (440057): wrapper (7.17.26016): starting
01:37:27 (440057): wrapper (7.17.26016): starting
01:37:27 (440057): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:52:07 (440057): cmdock exited; CPU time 2453.989312
02:52:07 (440057): called boinc_finish(0)

</stderr_txt>
]]>