Task 84726389

Name	ebola_GP_v1_sidock_00438038_r2_s-20.0_0
Workunit	55957419
Created	4 Oct 2024, 1:36:23 UTC
Sent	4 Oct 2024, 17:20:21 UTC
Report deadline	6 Oct 2024, 17:20:21 UTC
Received	5 Oct 2024, 0:47:26 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 39 min 38 sec
CPU time	1 hours 37 min 13 sec
Validate state	Valid
Credit	63.58
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	98.14 MB
Peak swap size	104.24 MB
Peak disk usage	16.83 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:33 (9711): wrapper (7.17.26016): starting
19:20:33 (9711): wrapper (7.17.26016): starting
19:20:33 (9711): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/54/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5676): wrapper (7.17.26016): starting
22:09:45 (5676): wrapper (7.17.26016): starting
22:09:45 (5676): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/54/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (19 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55baeb37af8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fb5bb912420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fb5bb74f00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fb5bb72e859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fb5bb79926e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fb5bb7a12fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fb5bb7a2b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55baeb3973dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55baeb3b68e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fb5bb74f090]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x55baeb375ec0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fb5bb912420]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fb5bb7e923f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fb5bb7eeec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fb5bb821a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55baeb38cadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55baeb359784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fb5bb730083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55baeb355a3a]

Exiting...
22:13:30 (4571): wrapper (7.17.26016): starting
22:13:30 (4571): wrapper (7.17.26016): starting
22:13:30 (4571): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/54/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5897): wrapper (7.17.26016): starting
00:48:24 (5897): wrapper (7.17.26016): starting
00:48:24 (5897): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/54/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (19 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f711961f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f3c81d8c420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f3c81bc900b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f3c81ba8859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f3c81c1326e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f3c81c1b2fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f3c81c1cb2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f71197e3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f71199d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f3c81bc9090]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x55f71195cec0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f3c81d8c420]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f3c81c6323f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f3c81c68ec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7f3c81c68dfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55f711973a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f711940784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f3c81baa083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f71193ca3a]

Exiting...
22:58:48 (5950): wrapper (7.17.26016): starting
22:58:48 (5950): wrapper (7.17.26016): starting
22:58:48 (5950): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/54/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:37:26 (440059): wrapper (7.17.26016): starting
01:37:27 (440059): wrapper (7.17.26016): starting
01:37:27 (440059): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/54/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:40:23 (440059): cmdock exited; CPU time 2050.141563
02:40:23 (440059): called boinc_finish(0)

</stderr_txt>
]]>