Task 84726385

Name	ebola_GP_v1_sidock_00438037_r2_s-20.0_0
Workunit	55957415
Created	4 Oct 2024, 1:36:23 UTC
Sent	4 Oct 2024, 17:20:22 UTC
Report deadline	6 Oct 2024, 17:20:22 UTC
Received	5 Oct 2024, 1:49:07 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 42 min 57 sec
CPU time	1 hours 40 min 42 sec
Validate state	Valid
Credit	65.97
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	97.15 MB
Peak swap size	103.31 MB
Peak disk usage	16.81 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:31 (9697): wrapper (7.17.26016): starting
19:20:31 (9697): wrapper (7.17.26016): starting
19:20:31 (9697): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/52/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5669): wrapper (7.17.26016): starting
22:09:45 (5669): wrapper (7.17.26016): starting
22:09:45 (5669): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/52/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5616e8111f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f070deca420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f070dd0700b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f070dce6859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f070dd5126e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f070dd592fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f070dd5ab2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5616e812e3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5616e814d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f070dd07090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f070dda123f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f070dda6ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f070ddd9a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5616e8123adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5616e80f0784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f070dce8083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5616e80eca3a]

Exiting...
22:13:30 (4569): wrapper (7.17.26016): starting
22:13:30 (4569): wrapper (7.17.26016): starting
22:13:30 (4569): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/52/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5895): wrapper (7.17.26016): starting
00:48:24 (5895): wrapper (7.17.26016): starting
00:48:24 (5895): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/52/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c834758f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f416419f420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f4163fdc00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f4163fbb859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f416402626e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f416402e2fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f416402fb2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c8347753dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c8347948e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f4163fdc090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f416407623f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f416407bec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7f416407bdfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55c83476aa9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c834737784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f4163fbd083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c834733a3a]

Exiting...
22:58:48 (5926): wrapper (7.17.26016): starting
22:58:48 (5926): wrapper (7.17.26016): starting
22:58:48 (5926): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/52/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:43:15 (440216): wrapper (7.17.26016): starting
01:43:15 (440216): wrapper (7.17.26016): starting
01:43:15 (440216): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/52/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:55:50 (440216): cmdock exited; CPU time 2249.377095
02:55:50 (440216): called boinc_finish(0)

</stderr_txt>
]]>